GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
         (685 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    32   0.044
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    30   0.23 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        26   3.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 106  KYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKL---------MQKTLDEIAASVK 156
            K L +P  +  + D     +    + ++  + P+ K +         +Q T +E  A+ K
Sbjct: 991  KNLSDPDQIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFEAARK 1050

Query: 157  ALKVAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTDNA 201
              K A  +   E++KN RC L T+  + ISD +D  Y +   + A
Sbjct: 1051 KAKKAKAAF--EKVKNERCTLFTNCCNHISDAIDAIYKQLSRNEA 1093


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 118 VDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDL 177
           +D+    I  YE  VK++ DP+  +L +   DE   SV      I S+ +   ++  C  
Sbjct: 233 IDEGKRTIKTYEALVKSSLDPNSDRLTEDDEDE-NISVTRTNSTIRSRSSSLSRSRSCS- 290

Query: 178 LTSAKSPISD 187
              A++P +D
Sbjct: 291 -RQAETPRAD 299


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 119 DDAVNVINYYEEAVKNAEDP---DKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRC 175
           ++AV     YEE ++N +     D+ K+  KT+   A     L   +E +  ER +    
Sbjct: 427 EEAVLTRREYEERLRNIDVTFGFDRHKVADKTVKTYAQRKLLLGQMVEKEVRERREADTA 486

Query: 176 DLLTSAKSPISDWLDY--KYGETVTDNA---------IFTTLPRYWENEFHKDMKALNVL 224
             L  AK        +  +Y + +  +A         +  T+  Y    +H D K  +VL
Sbjct: 487 AELRYAKEHADKENRHFLQYAQDLISDAKVKGRPILPLLKTVQSYKREHYH-DFKEADVL 545

Query: 225 PPDVLTRV 232
           P  +L+RV
Sbjct: 546 PQHLLSRV 553


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,809
Number of Sequences: 2123
Number of extensions: 26279
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 685
length of database: 516,269
effective HSP length: 69
effective length of query: 616
effective length of database: 369,782
effective search space: 227785712
effective search space used: 227785712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)