Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
(685 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 644 0.0
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 644 0.0
AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl tr... 120 5e-27
AL132876-18|CAD21672.2| 406|Caenorhabditis elegans Hypothetical... 42 0.001
AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRN... 42 0.001
AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical... 40 0.006
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p... 37 0.054
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p... 37 0.054
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 36 0.13
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 31 2.0
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 31 2.7
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 31 2.7
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 31 2.7
Z93385-6|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 31 3.6
Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 31 3.6
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 31 3.6
AF038623-6|AAB94154.1| 388|Caenorhabditis elegans Hypothetical ... 31 3.6
Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical p... 30 4.7
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 30 4.7
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 30 6.2
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 30 6.2
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 30 6.2
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 29 8.2
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 644 bits (1591), Expect = 0.0
Identities = 331/711 (46%), Positives = 435/711 (61%), Gaps = 31/711 (4%)
Query: 3 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 62
KR Q W P P L +YNSL+RQKE F+P G RV WY CGPTVYD+SHMGHARS
Sbjct: 166 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 225
Query: 63 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRN--LNDTVDD 120
Y+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y E + + +D
Sbjct: 226 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCED 285
Query: 121 AVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTS 180
V + +++ + DPDKKK+ + + ++ AL+ A++++D+ + ++ LL
Sbjct: 286 VVAALEHFKTKFETEMDPDKKKMFEVMIKKVQQQSSALEEAMKAQDSIATEEAKGRLLNE 345
Query: 181 AKSPISDWLDYKYGETVTDNAIFTTLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKII 240
++ +S+WLD+ +G+ V D+++F L + +E EF DM LNVLP DVLTRVSEYVP++I
Sbjct: 346 SRDVLSEWLDHNHGKDVRDHSVFDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVI 405
Query: 241 AYIQKIISNGFAYES-NGSVYFNVSEFDGNERHHYARLVPEAYGDT-----KSLQEGEGD 294
Y++KIISNG+AY + +GSVYF+ F+ N +H YA+LVPEAYG+ K+++E EG+
Sbjct: 406 TYVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGE 465
Query: 295 LT---DDAAEKRSPNDFALWKRSKAGEPSWDSPWGAGRPGWHIECSAMASDVCQNKLDIH 351
L+ D KRSPNDFALWK SK GEP W S WG GRPGWHIECS M+S +C +KLDIH
Sbjct: 466 LSMSDDRLKSKRSPNDFALWKSSKDGEPFWPSEWGNGRPGWHIECSVMSSAICGSKLDIH 525
Query: 352 TGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISDALKR 411
GG DLKFPHHDNE+AQ EAH+D+P WVNYFLH G L I G KMSKSLKNFITI AL+
Sbjct: 526 AGGFDLKFPHHDNEIAQVEAHYDDPHWVNYFLHCGTLRIQGMKMSKSLKNFITIRKALED 585
Query: 412 HTARQLRFGFLLHGWKETLDYSENTMEMAIQTEKQFNEFFLTVKDALRSGYDEGCGGGWE 471
+T RQLR FL+H W + LDYS +TME A+Q EK NEFFL VKD LR Y G++
Sbjct: 586 YTPRQLRLLFLMHNWADVLDYSSSTMERALQFEKITNEFFLLVKDFLRRHYKPDRSEGYQ 645
Query: 472 P---EEQRLFAKLSMAKEQVHAALCDNIDTRGAIDALRELVCACHVYXXXXXXXXX---- 524
+E +L + K +VH ALCD++DTR I+ REL+ + Y
Sbjct: 646 KFQGKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISLGNAYIVEKEKEGHVPNC 705
Query: 525 XXXXXXXXYVTDVLHVFGVVEGPRGGIGFPVGD---ADGVSL----EETVMPYLEALSAF 577
Y+T++L +FG + IGF D +G S E VMPYL+AL+ F
Sbjct: 706 LLLRNIAAYITNLLKIFGAIPQSNQEIGFVSEDECNGEGASTSFNKEAVVMPYLDALAQF 765
Query: 578 XXXXXXXXXXXXXXXXLALCDALRDRVLPDLGVRLEDKPDRTVVKLVSXXXXXXXXXXXX 637
L CD LRD+ L +LGVRLED+ +TVVKLV
Sbjct: 766 REKVRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKD 825
Query: 638 XXXXXXXXXXXXXXXXXRLKEEQ----KKISPAEMFR--KETDKYSKFDEK 682
R K ++ KKI P E+F+ + KYSKFDE+
Sbjct: 826 TEKKRKDKEKADKEQKAREKADKEAAAKKIKPEELFKQGEHVGKYSKFDER 876
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 644 bits (1591), Expect = 0.0
Identities = 331/711 (46%), Positives = 435/711 (61%), Gaps = 31/711 (4%)
Query: 3 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 62
KR Q W P P L +YNSL+RQKE F+P G RV WY CGPTVYD+SHMGHARS
Sbjct: 165 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 224
Query: 63 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRN--LNDTVDD 120
Y+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y E + + +D
Sbjct: 225 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCED 284
Query: 121 AVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTS 180
V + +++ + DPDKKK+ + + ++ AL+ A++++D+ + ++ LL
Sbjct: 285 VVAALEHFKTKFETEMDPDKKKMFEVMIKKVQQQSSALEEAMKAQDSIATEEAKGRLLNE 344
Query: 181 AKSPISDWLDYKYGETVTDNAIFTTLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKII 240
++ +S+WLD+ +G+ V D+++F L + +E EF DM LNVLP DVLTRVSEYVP++I
Sbjct: 345 SRDVLSEWLDHNHGKDVRDHSVFDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVI 404
Query: 241 AYIQKIISNGFAYES-NGSVYFNVSEFDGNERHHYARLVPEAYGDT-----KSLQEGEGD 294
Y++KIISNG+AY + +GSVYF+ F+ N +H YA+LVPEAYG+ K+++E EG+
Sbjct: 405 TYVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGE 464
Query: 295 LT---DDAAEKRSPNDFALWKRSKAGEPSWDSPWGAGRPGWHIECSAMASDVCQNKLDIH 351
L+ D KRSPNDFALWK SK GEP W S WG GRPGWHIECS M+S +C +KLDIH
Sbjct: 465 LSMSDDRLKSKRSPNDFALWKSSKDGEPFWPSEWGNGRPGWHIECSVMSSAICGSKLDIH 524
Query: 352 TGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISDALKR 411
GG DLKFPHHDNE+AQ EAH+D+P WVNYFLH G L I G KMSKSLKNFITI AL+
Sbjct: 525 AGGFDLKFPHHDNEIAQVEAHYDDPHWVNYFLHCGTLRIQGMKMSKSLKNFITIRKALED 584
Query: 412 HTARQLRFGFLLHGWKETLDYSENTMEMAIQTEKQFNEFFLTVKDALRSGYDEGCGGGWE 471
+T RQLR FL+H W + LDYS +TME A+Q EK NEFFL VKD LR Y G++
Sbjct: 585 YTPRQLRLLFLMHNWADVLDYSSSTMERALQFEKITNEFFLLVKDFLRRHYKPDRSEGYQ 644
Query: 472 P---EEQRLFAKLSMAKEQVHAALCDNIDTRGAIDALRELVCACHVYXXXXXXXXX---- 524
+E +L + K +VH ALCD++DTR I+ REL+ + Y
Sbjct: 645 KFQGKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISLGNAYIVEKEKEGHVPNC 704
Query: 525 XXXXXXXXYVTDVLHVFGVVEGPRGGIGFPVGD---ADGVSL----EETVMPYLEALSAF 577
Y+T++L +FG + IGF D +G S E VMPYL+AL+ F
Sbjct: 705 LLLRNIAAYITNLLKIFGAIPQSNQEIGFVSEDECNGEGASTSFNKEAVVMPYLDALAQF 764
Query: 578 XXXXXXXXXXXXXXXXLALCDALRDRVLPDLGVRLEDKPDRTVVKLVSXXXXXXXXXXXX 637
L CD LRD+ L +LGVRLED+ +TVVKLV
Sbjct: 765 REKVRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKD 824
Query: 638 XXXXXXXXXXXXXXXXXRLKEEQ----KKISPAEMFR--KETDKYSKFDEK 682
R K ++ KKI P E+F+ + KYSKFDE+
Sbjct: 825 TEKKRKDKEKADKEQKAREKADKEAAAKKIKPEELFKQGEHVGKYSKFDER 875
>AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl trna
synthetase protein2, isoform a protein.
Length = 179
Score = 120 bits (288), Expect = 5e-27
Identities = 51/76 (67%), Positives = 61/76 (80%)
Query: 42 VNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQK 101
V WY CGPTV D+SHMGHARSY+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ
Sbjct: 53 VGWYICGPTVNDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQS 112
Query: 102 YLYEKYLKEPRNLNDT 117
+L + Y E +LN T
Sbjct: 113 HLLKSYFNESLHLNST 128
>AL132876-18|CAD21672.2| 406|Caenorhabditis elegans Hypothetical
protein Y105E8A.20 protein.
Length = 406
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 382 FLHTGHLMIAGCKMSKSLKNFITISDALKRHTARQLRFGFLLHG 425
F+H GH +I KMSKSL N + S+A+ + TA LR+ L HG
Sbjct: 182 FIH-GHWLIDNVKMSKSLGNVVNPSEAITKFTAEGLRYFLLKHG 224
>AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRNA
synthetase (mitochondrial)protein.
Length = 500
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 382 FLHTGHLMIAGCKMSKSLKNFITISDALKRHTARQLRFGFLLHG 425
F+H GH +I KMSKSL N + S+A+ + TA LR+ L HG
Sbjct: 276 FIH-GHWLIDNVKMSKSLGNVVNPSEAITKFTAEGLRYFLLKHG 318
>AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical
protein Y23H5A.8 protein.
Length = 207
Score = 39.9 bits (89), Expect = 0.006
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 137 DPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGET 196
DPDKKK+ + + +I AL+ A++++ + C + SP
Sbjct: 2 DPDKKKMFEVIIKKIQQQSSALEEAMKAQKPK----VDCSMSREMCSP------------ 45
Query: 197 VTDNAIFTTLPRYWENEFHKDMKALNVLPPDVLTRVS 233
+ + + R +E EF DM LNVLP DVLTRVS
Sbjct: 46 ---SGLIIIMERIYEKEFLADMARLNVLPVDVLTRVS 79
Score = 33.5 bits (73), Expect = 0.51
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 162 IESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTDNAIFTTLPR 208
+ ++D+ + ++ LL ++ +S+WLD+ +G+ D+++F L +
Sbjct: 78 VSAQDSIATEEAKGRLLNESRDVLSEWLDHNHGKDARDHSVFDDLAK 124
>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 36.7 bits (81), Expect = 0.054
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 348 LDIHTGGVDLKFPHHDNELAQSEAHF--DEPGWVNYFLHTGHLMIAGCKMSKSLKNFITI 405
+D+ G DL H L A + D W GHL++ KMSKS NF+T+
Sbjct: 670 IDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNFMTL 729
Query: 406 SDALKRHTARQLR 418
+A+++ +A +R
Sbjct: 730 EEAIEKFSADGMR 742
>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 36.7 bits (81), Expect = 0.054
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 348 LDIHTGGVDLKFPHHDNELAQSEAHF--DEPGWVNYFLHTGHLMIAGCKMSKSLKNFITI 405
+D+ G DL H L A + D W GHL++ KMSKS NF+T+
Sbjct: 670 IDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNFMTL 729
Query: 406 SDALKRHTARQLR 418
+A+++ +A +R
Sbjct: 730 EEAIEKFSADGMR 742
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 35.5 bits (78), Expect = 0.13
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 139 DKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTSAKSPISDWL 189
DKKK+++K L++I +SVK K A+E +D E + + S WL
Sbjct: 414 DKKKVLRKALEQIPSSVKLWKAAVELEDPEDARILLTRAVECCSSSTEMWL 464
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 31.5 bits (68), Expect = 2.0
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 96 KRARQKYLYEKYLKE--PRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAA 153
K+A + Y +++ KE P+ + V++ + I Y+ A + D K M + L E AA
Sbjct: 85 KKAHRHYDWDEEKKEWVPKAKQEEVNE--DFIAEYQ-ANYGVQYDDIYKKMDEELQEKAA 141
Query: 154 SVKALKVAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTDNAIFTT-LPR-YWE 211
KA K E K+ +R K AK WLD G+ V +A++ + LP +
Sbjct: 142 --KAQKEDEEKKEKKRKKKVGLGAGEDAKE---GWLDL--GDKV--HAVYVSNLPEDITD 192
Query: 212 NEFHKDMKALNVLPPDVLT 230
EF K M V+ PD+ T
Sbjct: 193 EEFQKFMSKCGVIQPDIRT 211
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 31.1 bits (67), Expect = 2.7
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 103 LYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKK-KLMQKTLDEIAASVKALKVA 161
L++K + + D VD+ ++VI +++ +++ED K +++QK + ASV+ +K
Sbjct: 427 LFQKLIDGRKEFTDKVDNELSVIKCFQQLEQDSEDLQKVIQVIQKMRNLDNASVENIK-G 485
Query: 162 IESKDNERIKN 172
I S +E ++N
Sbjct: 486 IPSVVSELLQN 496
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 160 VAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTDNAIFTTLPRYWENEFHKD 217
+++ KDN +++ S +LT K PI + D+ T NA L Y NE H D
Sbjct: 217 MSLRLKDNTKLQTSHSVMLTDEKIPIDRYHDFVVDNTQAYNAPNQPL-NYILNEKHND 273
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 160 VAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTDNAIFTTLPRYWENEFHKD 217
+++ KDN +++ S +LT K PI + D+ T NA L Y NE H D
Sbjct: 224 MSLRLKDNTKLQTSHSVMLTDEKIPIDRYHDFVVDNTQAYNAPNQPL-NYILNEKHND 280
>Z93385-6|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 30.7 bits (66), Expect = 3.6
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 100 QKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALK 159
Q+ + + + + + L + D + E A+K+A +K+K QK D + +K LK
Sbjct: 610 QRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSARGAEKEKA-QKKYDRLKEQLKKLK 668
Query: 160 VAIESKDNER 169
++ KD +
Sbjct: 669 ISRTDKDENK 678
>Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 30.7 bits (66), Expect = 3.6
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 100 QKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALK 159
Q+ + + + + + L + D + E A+K+A +K+K QK D + +K LK
Sbjct: 682 QRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSARGAEKEKA-QKKYDRLKEQLKKLK 740
Query: 160 VAIESKDNER 169
++ KD +
Sbjct: 741 ISRTDKDENK 750
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 30.7 bits (66), Expect = 3.6
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 100 QKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALK 159
Q+ + + + + + L + D + E A+K+A +K+K QK D + +K LK
Sbjct: 682 QRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSARGAEKEKA-QKKYDRLKEQLKKLK 740
Query: 160 VAIESKDNER 169
++ KD +
Sbjct: 741 ISRTDKDENK 750
>AF038623-6|AAB94154.1| 388|Caenorhabditis elegans Hypothetical
protein T08B6.2 protein.
Length = 388
Score = 30.7 bits (66), Expect = 3.6
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 21 LKLYNSLSRQKEEFIPANG-----NRVNWYSCGPTVYDASHMGHARSYMSF-DILRRVMA 74
L YN+ SR F+ +NG NR W+ P +Y +M SY++F DI RV +
Sbjct: 317 LSWYNAKSRSSNHFLISNGQKYEINREEWFDLDPVIY---NMTLNYSYLTFQDIQIRVYS 373
Query: 75 N 75
+
Sbjct: 374 S 374
>Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical
protein F32B6.10 protein.
Length = 562
Score = 30.3 bits (65), Expect = 4.7
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 109 KEPRNLNDTVDDAVNVINY--YEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKD 166
K +NL + D+ + N EEA+KN ++ KK+++ K DE+ K I+ +
Sbjct: 4 KNKKNLPNYADNKLKKNNDPGKEEAIKNNDNEPKKEVISKKSDELKNVEGVGKEVIKYDN 63
Query: 167 NERI-KNSRCDLLTSAKSPISDW-LDYKYGE-TVTDNAIFTTLP--RYWENEFHKDMKAL 221
N + K + A + DW + ++ GE T + +LP +Y+ + + ++
Sbjct: 64 NGQCEKVMEIGEIVIAPMMLGDWMITHQIGEGTFAKIFVGRSLPFDQYYAVKIEVRLTSM 123
Query: 222 NVLPPDV-LTRVSEYVPKIIAYIQKII 247
+ + +V + R+ Y P + +I K +
Sbjct: 124 DFIDHEVTVMRLLSY-PNELPHIPKCV 149
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 30.3 bits (65), Expect = 4.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 89 DIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDA-VNVINYYEEAVKNAEDPDKKKLMQKT 147
DID K R+ + K +K+ L+D D +++ EEA K + DKKK + T
Sbjct: 848 DIDTKTKNLNREVDRFMKKMKKITTLDDLAKDGKIDIDTIVEEAEKKKAEQDKKKEKKST 907
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 29.9 bits (64), Expect = 6.2
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 105 EKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDK----KKLMQKTLDEIAASVKALKV 160
E E NLN + + EE K +E+ ++ K ++K ++E +++++++
Sbjct: 828 ESLRTECENLNSKIQSIEESRRHAEE--KGSENLERMITEKSRLEKDIEERESTIQSIQE 885
Query: 161 AIESKDNE 168
A+E+KDNE
Sbjct: 886 ALETKDNE 893
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 29.9 bits (64), Expect = 6.2
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 105 EKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDK----KKLMQKTLDEIAASVKALKV 160
E E NLN + + EE K +E+ ++ K ++K ++E +++++++
Sbjct: 830 ESLRTECENLNSKIQSIEESRRHAEE--KGSENLERMITEKSRLEKDIEERESTIQSIQE 887
Query: 161 AIESKDNE 168
A+E+KDNE
Sbjct: 888 ALETKDNE 895
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.9 bits (64), Expect = 6.2
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 105 EKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDK----KKLMQKTLDEIAASVKALKV 160
E E NLN + + EE K +E+ ++ K ++K ++E +++++++
Sbjct: 830 ESLRTECENLNSKIQSIEESRRHAEE--KGSENLERMITEKSRLEKDIEERESTIQSIQE 887
Query: 161 AIESKDNE 168
A+E+KDNE
Sbjct: 888 ALETKDNE 895
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 29.5 bits (63), Expect = 8.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 87 ITDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAV 132
+ D+D KI+ + R K EK++++ + + + +N+I+ E+ V
Sbjct: 295 LLDMDAKIVDKFRDKEKVEKFVRDHERIYEINEKTINMISENEKRV 340
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,268
Number of Sequences: 27539
Number of extensions: 669760
Number of successful extensions: 2012
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1980
Number of HSP's gapped (non-prelim): 31
length of query: 685
length of database: 12,573,161
effective HSP length: 86
effective length of query: 599
effective length of database: 10,204,807
effective search space: 6112679393
effective search space used: 6112679393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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