GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
         (685 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   2.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   3.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   8.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   8.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   8.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 125 INYYEEAVKNAEDPDKKKLMQKTLDEIAASVKA 157
           IN ++  VK   D + +K   K +  +AAS+KA
Sbjct: 231 INGFDPYVKTPNDEELEKPTDKRMFVLAASIKA 263


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 88  TDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKN 134
           T  + KII      Y Y  Y     N N+  ++  N  N Y++  KN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN--NNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 88  TDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKN 134
           T  + KII      Y Y  Y     N N+  ++  N  N Y++  KN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN--NNYKKLYKN 119


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 82  LYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLND 116
           ++V +I+ IDD  ++ + Q    E++L E    ND
Sbjct: 65  IFVRSISKIDDVTMEYSVQLTFREQWLDERLRFND 99


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 86  NITDIDDKIIKRARQKYLYEKYLKEPRNLN 115
           NI  I+ +I K  +   L+ ++LK PR  N
Sbjct: 167 NIAVIEYRIPKSGKGFSLFARFLKNPRPCN 196


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 92  DKIIKRARQKYLYEKYLKEPRNLND 116
           DK+++  R KY + KY K  + L +
Sbjct: 41  DKVLESPRGKYEFSKYDKLKKKLEE 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,801
Number of Sequences: 429
Number of extensions: 7878
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 685
length of database: 140,377
effective HSP length: 62
effective length of query: 623
effective length of database: 113,779
effective search space: 70884317
effective search space used: 70884317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)