Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21859| Best HMM Match : Aminotran_4 (HMM E-Value=4.5e-31)          112   6e-25
SB_2585| Best HMM Match : COX7C (HMM E-Value=2.4)                      32   1.0  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.4  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   5.4  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   29   5.4  
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)               29   9.5  
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)             29   9.5  

>SB_21859| Best HMM Match : Aminotran_4 (HMM E-Value=4.5e-31)
          Length = 215

 Score =  112 bits (269), Expect = 6e-25
 Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 1/92 (1%)

Query: 79  PKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGL 138
           PKP+   L FGK FTDH L + +  E  GW  P+I+P+ NL++ PAA ALHY ++ FEG+
Sbjct: 14  PKPDPNTLVFGKEFTDHALIVKWSDE-DGWDNPQIIPYGNLSLPPAASALHYGLECFEGM 72

Query: 139 KAYRGVDDKIRLFRPELNMERMNLAAQRSGLP 170
           KAYRG D KIR+FRP +NM+RMN +A R+ LP
Sbjct: 73  KAYRGDDGKIRMFRPLMNMKRMNNSAARACLP 104



 Score = 96.3 bits (229), Expect = 4e-20
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query: 212 TFGIMAPESALLFVILSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKVGSNYGPTI 271
           + G+    SA+LFVILSPV  Y++  +   V++ ADP  VRA+PGGVG+ K+G NY PTI
Sbjct: 106 SLGVNKANSAMLFVILSPVGPYFRTGTFNPVALLADPQYVRAWPGGVGDCKMGGNYAPTI 165

Query: 272 EATARAAKLGHHQVLWLFGPDHQ 294
            A   A + G  QVLWLFG DHQ
Sbjct: 166 LAQQNAERQGLQQVLWLFGEDHQ 188


>SB_2585| Best HMM Match : COX7C (HMM E-Value=2.4)
          Length = 193

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 182 KRLVQIDQEWVPHSETSTLYIRPTLIGIEPTF-GIMAPESALLFVIL 227
           K+ VQ DQE  P+       + P L+G+  TF G+    S +L V+L
Sbjct: 110 KKTVQKDQEKTPNKGQVGANLNPVLVGVGATFGGLFLAVSIILMVVL 156


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 11   KWIFENQHKLQTIRWCSSSLRYKELE-DSVQADHVAPSPTQKPHP-QITPEISFKYEDLQ 68
            +++ + QH +QT+  C + L +++ E   +Q       P+  P P Q +P + F+   L 
Sbjct: 946  RFLADQQHLMQTLNQCYNQLNHQQQELGFLQNQFQQLFPSASPEPRQPSPMMGFQPSYLS 1005

Query: 69   VRLAAPYQLTPKP 81
               A P   +P P
Sbjct: 1006 NPFAMPPGTSPTP 1018


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 327 PGVTRRSIIELASQWEDIV 345
           PGVTRR ++ +A+ W D++
Sbjct: 560 PGVTRRQLLTIATNWYDVI 578


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 327 PGVTRRSIIELASQWEDIV 345
           PGVTRR ++ +A+ W D++
Sbjct: 302 PGVTRRQLLTIATNWYDVI 320


>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
          Length = 556

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 35  LEDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAA 73
           LE  V+A+ V P P   P P + P+ +  Y   Q+ + A
Sbjct: 114 LEKRVEANAVRPPPPPSPSPSVVPKNNSAYLQTQLTVRA 152


>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
          Length = 391

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 326 LPGVTRRSIIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRVG 384
           L    R  + ELA+Q++ ++  +E    D+VI+++       + G  T  +  PIS++G
Sbjct: 95  LRATERSKVAELANQYKHLLSSDEGADYDQVIEIDLSVLEPHVNGPFTPDLAHPISKLG 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,000
Number of Sequences: 59808
Number of extensions: 592814
Number of successful extensions: 1299
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 8
length of query: 426
length of database: 16,821,457
effective HSP length: 84
effective length of query: 342
effective length of database: 11,797,585
effective search space: 4034774070
effective search space used: 4034774070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)