Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
(426 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical pr... 351 6e-97
U21550-1|AAC47236.1| 378|Caenorhabditis elegans ECA39 protein. 324 5e-89
AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical ... 296 2e-80
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 33 0.29
Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical pr... 33 0.51
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 31 1.2
AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical ... 30 3.6
>Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical
protein K02A4.1 protein.
Length = 415
Score = 351 bits (863), Expect = 6e-97
Identities = 173/378 (45%), Positives = 240/378 (63%), Gaps = 10/378 (2%)
Query: 48 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 106
P ++ H + + +F + DL+++LA P QL KP + +L FG + D+M+ + E G
Sbjct: 31 PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG 90
Query: 107 GWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNMERMNLAAQR 166
W P+I P L IHP AK LHYA +LFEG+KAYRG+D+KIR+FRPE+NM RM A R
Sbjct: 91 -WHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALR 149
Query: 167 SGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIRPTLIGIEPTFGIMAPESALLFVI 226
+ LP FD EE++ + L+++DQEWVP+S+ +LY+RPTLIG +PT G+ A +FVI
Sbjct: 150 AALPDFDSEEMINVLTELLRLDQEWVPNSDVCSLYLRPTLIGTDPTLGVGCATEAKMFVI 209
Query: 227 LSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHHQVL 286
PV AYY VS+ AD +RAFPGGVG K+G NY PTI AA QVL
Sbjct: 210 TGPVGAYYSTGFQ-PVSLLADSRFIRAFPGGVGAYKMGCNYAPTIWVGKEAASKNCQQVL 268
Query: 287 WLFGPDHQLTEVGAMNIFMVHINDQGDKQLSTPPLN-GLILPGVTRRSIIELASQWEDIV 345
WL+G + LTEVG MNIF+ N++GD +L TPPL+ GLILPGVTR S++EL +W +
Sbjct: 269 WLYGENEDLTEVGTMNIFLFWKNEEGDMELITPPLHRGLILPGVTRDSLLELGREWGEYK 328
Query: 346 VREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRVGFLE------QNIEIPTMKQSN 399
V E + M+ V + + RL EMFG+GTA ++SP+ ++ + + + IPTM
Sbjct: 329 VTERTLNMEEVKKALSEKRLYEMFGSGTACVVSPVGKILYHNKVTDEYEELHIPTMSSKF 388
Query: 400 PVFQRVKDTLLAIQYGHV 417
V Q+ +T+ IQYG +
Sbjct: 389 GVMQKFYNTINDIQYGRI 406
>U21550-1|AAC47236.1| 378|Caenorhabditis elegans ECA39 protein.
Length = 378
Score = 324 bits (797), Expect = 5e-89
Identities = 161/339 (47%), Positives = 219/339 (64%), Gaps = 5/339 (1%)
Query: 48 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 106
P ++ H + + +F + DL+++LA P QL KP + +L FG + D+M+ + E G
Sbjct: 11 PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWIAERG 70
Query: 107 GWQKPEIMPFENLNIHPAAKALHYAIQLF-EGLKAYRGVDDKIRLFRPELNMERMNLAAQ 165
W P+I P L IHP AK LHYA +LF EG+KAYRG+D+KIR+FRPE+NM RM A
Sbjct: 71 -WHHPKIEPIGELKIHPGAKVLHYASELFSEGMKAYRGIDNKIRMFRPEMNMARMKRTAL 129
Query: 166 RSGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIRPTLIGIEPTFGIMAPESALLFV 225
R+ LP+F QC R+++ DQEWVP+S+ +LY+RPTLIG +PT G+ A +FV
Sbjct: 130 RAALPVFRLRGDDQCTYRILRSDQEWVPNSDVCSLYLRPTLIGTDPTLGVGCATEAKMFV 189
Query: 226 ILSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHHQV 285
I PV AYY VS+ AD +RAFPGGVG K+G NY PTI AA QV
Sbjct: 190 ITGPVGAYYSTGFQ-PVSLLADSRFIRAFPGGVGAYKMGCNYAPTIWVGKEAASKNCQQV 248
Query: 286 LWLFGPDHQLTEVGAMNIFMVHINDQGDKQLSTPPLN-GLILPGVTRRSIIELASQWEDI 344
LWL+G + LTEVG MNIF+ N++GD +L TPPL+ GLILPGVTR S++EL +W +
Sbjct: 249 LWLYGENEDLTEVGTMNIFLFWKNEEGDMELITPPLHRGLILPGVTRDSLLELGREWGEY 308
Query: 345 VVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRV 383
V E + M+ V + + RL EMFG+GTA ++SP+ ++
Sbjct: 309 KVTERTLNMEEVKKALSEKRLYEMFGSGTACVVSPVGKI 347
>AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical
protein Y44A6D.5 protein.
Length = 393
Score = 296 bits (726), Expect = 2e-80
Identities = 153/365 (41%), Positives = 224/365 (61%), Gaps = 11/365 (3%)
Query: 61 SFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLN 120
SF+Y +L V + Q P AK LGFG+YF+DHM+ I + + GW P+I PF+N +
Sbjct: 23 SFQYANLVVEKSTKKQRIPSDPAK-LGFGRYFSDHMIDIDWDVK-EGWIAPKICPFQNFS 80
Query: 121 IHPAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQC 180
IHPAAK LHYAI++FEG+KAY GVD KIRLFRPELNMERM +A+RS LP FD +
Sbjct: 81 IHPAAKVLHYAIEIFEGMKAYHGVDGKIRLFRPELNMERMRRSARRSSLPDFDARQACLL 140
Query: 181 IKRLVQIDQEWVPHSETSTLYIRPTLIGIEPTFGIMAPESALLFVILSPVSAYYKASSDG 240
I L++ID + VP ++ ++LYIRP + E G+ A S +Y+ + +
Sbjct: 141 IDELIRIDADIVPKTDQASLYIRPMMFATEQHIGVSESTQAKWACFTSITGSYF--NYEK 198
Query: 241 AVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHHQVLWLFGPDHQLTEVGA 300
+ + ADP +VR++ GGVG K+G NY PTI AA G Q +WL G + +TE GA
Sbjct: 199 GIRLLADPEMVRSWKGGVGQYKMGCNYAPTIFVGKMAALHGCDQAMWLSGDNRLITEAGA 258
Query: 301 MNIFMVHINDQGDKQLSTPPL-NGLILPGVTRRSIIELASQWEDIVVREEVITMDRVIQL 359
MN+FM+ N+ + +L TPP +GL+LPG+TR+SI+ELA + + V E+ TM ++ +
Sbjct: 259 MNVFMLWTNEDNELELITPPTDSGLLLPGITRQSIVELAQEMNLMKVSEKNFTMAQLSRA 318
Query: 360 NQQGRLLEMFGAGTAVIISPISRVGFLE------QNIEIPTMKQSNPVFQRVKDTLLAIQ 413
+ R+ E F +GTA + P+S + + + +N++IPT+ + R+ TL I
Sbjct: 319 VHEKRVHEFFVSGTAANVGPVSEIVYCDKELDVMENLQIPTLSSKMQLHTRLNKTLSDIH 378
Query: 414 YGHVE 418
+G +E
Sbjct: 379 FGRIE 383
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 33.5 bits (73), Expect = 0.29
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 36 EDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPK 80
E++ HV P PT+K ++TP++ +++ AP+ + P+
Sbjct: 436 EETTTKSHVVPKPTKKGTVKVTPKLELSFDEPTEITKAPHPVKPR 480
>Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical
protein F59B2.12 protein.
Length = 918
Score = 32.7 bits (71), Expect = 0.51
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 226 ILSPVSAYYKASSDG-AVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHHQ 284
++ + A + +SS G S+F++ +F GG K+ ++ + +++ + GHHQ
Sbjct: 22 LIDDLKAKFSSSSSGFGASMFSNSGAKSSFGGGFAMPKLDASKAAMVHSSS--SHKGHHQ 79
Query: 285 VLWLFGPDHQLTEVGA 300
H LT VGA
Sbjct: 80 SSGSSSNTHSLTVVGA 95
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 31.5 bits (68), Expect = 1.2
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 14 FENQHKLQTIRWCSSSLRYKELED----SVQADHVAP-SPTQKPHPQITPEISFKYEDLQ 68
FENQ K Q+I K L D S+QA V+ +PT HPQ+ P+++ Q
Sbjct: 353 FENQRKEQSIVVQQQVDELKVLPDLTDSSIQARSVSVVAPTAPTHPQVAPQVA-----PQ 407
Query: 69 VRLAAPYQLTPKPEAKELGFGKYF 92
V L Q+ P+ + + + ++
Sbjct: 408 VALQTAQQVAPQVQQPQQPYNNFW 431
>AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical
protein E01A2.5 protein.
Length = 249
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 342 EDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRVGFLEQNIEIPTMKQSNPV 401
EDI R +++ + + + Q G L EM G I+ ++ +G EQ++ T+ + P+
Sbjct: 127 EDICRRLDLVPLCFLWEREQNGLLAEMVENGLDAILIKVAAIGLGEQHLG-KTLSEMAPI 185
Query: 402 FQRVKD 407
+ ++D
Sbjct: 186 MKVLQD 191
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,763,326
Number of Sequences: 27539
Number of extensions: 468335
Number of successful extensions: 1135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 8
length of query: 426
length of database: 12,573,161
effective HSP length: 83
effective length of query: 343
effective length of database: 10,287,424
effective search space: 3528586432
effective search space used: 3528586432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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