GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
         (426 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.58 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   5.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   5.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   5.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   5.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   5.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   5.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   5.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   5.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   7.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   7.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   9.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   9.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   9.5  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +AP+  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLAPTHLQSPNTQTHPSASCKYAD 103


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
          protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39 VQADHVAPSPTQKPHPQITPEISFKYED 66
          +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 32 LQPQRLASTHLQSPNTQTHPSASCKYAD 59


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  VQADHVAPSPTQKPHPQITPEISFKYED 66
           +Q   +A +  Q P+ Q  P  S KY D
Sbjct: 76  LQPQRLASTHLQSPNTQTHPSASCKYAD 103


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 38  SVQADHVAPSPTQKPHPQIT 57
           ++++D + P P   P PQ T
Sbjct: 385 ALKSDEIPPEPVPTPEPQPT 404


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 304 FMVHINDQGDKQLSTPPLNG 323
           FM HI++ GD +  T  +NG
Sbjct: 231 FMSHIHNDGDNKPDTILVNG 250


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 105  LGGWQKPEIMPFENLNIHPAAKA--LHYAIQLFE 136
            LGGW   +   +  L  +PAA+A  + + +Q  E
Sbjct: 1475 LGGWNDSQGDKYSRLVNNPAARARFIKHVLQFLE 1508


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 95   HMLKIYYHKELGGWQKPEIMP 115
            H   I+Y  E G W+  +I P
Sbjct: 1427 HGYTIHYKPEFGDWETVQIGP 1447


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 355 RVIQ--LNQQGRLLEMFGAGTAVIISPISRVGFLEQNIEIPTMKQSNPVFQRVKDTLLAI 412
           R++Q  ++Q  R +    AG +   SP   +G++    ++      +P F        A 
Sbjct: 391 RIVQPMIDQSNRAVFSPHAGPSGAYSPDGTMGYMMDGQQMMHRPPGDPAFHNQYAHYPAE 450

Query: 413 QYGH 416
            YGH
Sbjct: 451 YYGH 454


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,879
Number of Sequences: 317
Number of extensions: 4534
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 15
length of query: 426
length of database: 114,650
effective HSP length: 59
effective length of query: 367
effective length of database: 95,947
effective search space: 35212549
effective search space used: 35212549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)