GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...   295   8e-81
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    28   2.9  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    28   2.9  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    27   5.0  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   6.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   6.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   6.6  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   8.8  

>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score =  295 bits (724), Expect = 8e-81
 Identities = 149/345 (43%), Positives = 210/345 (60%), Gaps = 7/345 (2%)

Query: 76  QLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLF 135
           +L P PE K L FG+ FTDHML + +++E G W  PEI+PF  L  HPA+   HY  + F
Sbjct: 25  ELKPLPEWKSLKFGENFTDHMLIMKWNREKG-WSTPEIVPFGKLCFHPASSVFHYGFECF 83

Query: 136 EGLKAYRGVDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLVQIDQEWVPHS 195
           EG+KA+R      RLFRP  N ERM     R  LP FD  EL + I++ V  +  WVP  
Sbjct: 84  EGMKAFRDEKGVPRLFRPIKNAERMLSTGTRISLPSFDPAELAEIIRKFVAHENRWVPDQ 143

Query: 196 ETSTLYIRPTLIGIEPTFGIMAPESALLFVILSPVSAYYKASSDGAVSIFADPNVVRAFP 255
              +LYIRPT IG +   G+   ++A+L+VI SPV  YY +S   AV +      VRA+P
Sbjct: 144 RGYSLYIRPTFIGTDEALGVHHCDNAMLYVIASPVGPYY-SSGFKAVKLCCSEESVRAWP 202

Query: 256 GGVGNRKVGSNYGPTIEATARAAKLGHHQVLWLFGPDHQLTEVGAMNIFMVHINDQGDKQ 315
           GG G+ K+G NY P++     AAK G+ Q+LWL+G +  +TEVG MN F V IN  G+K+
Sbjct: 203 GGTGHYKLGGNYAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMNCFTVWINKNGEKE 262

Query: 316 LSTPPLNGLILPGVTRRSIIELASQW---EDIVVREEVITMDRVIQLNQQGRLLEMFGAG 372
           + T PL+G+ILPGVTR SI+E+  +    +   + E   +M  V Q +++GRLLE+FGAG
Sbjct: 263 IITAPLDGMILPGVTRDSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRLLEVFGAG 322

Query: 373 TAVIISPISRVGF--LEQNIEIPTMKQSNPVFQRVKDTLLAIQYG 415
           TA ++SP+  + +   E  I +P  +++ P+   +   +L IQYG
Sbjct: 323 TAALVSPVKAINYKGTEYEIPMPEGQEAGPITSEISKWILDIQYG 367


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 123 PAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNM-ERMNLAAQRSG 168
           P A A   A Q+F G +   G+  +I  F+P+  M +R  +  Q +G
Sbjct: 389 PQAAAQQMAAQMFGGFQQAAGIPSQITGFQPQAMMPQRTGMQPQMTG 435


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 174 GEELVQCIKRLVQIDQEWVPHSETSTLYIRPTLIGIEPTFGIMAPESALLFVILSPVSAY 233
           G++ ++  K  V I    V  + ++TL  +  + G +   G   P   LL+    PVS  
Sbjct: 281 GKKGMRVPKNAVVIRTPLVLDTTSNTLNPKVMISGWQFLMGEF-PSDELLYFPRLPVSCL 339

Query: 234 YKASSDGAVSIF 245
           YK S DG +  F
Sbjct: 340 YKVSEDGLIKDF 351


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 27  SSSLRYKELEDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKPEAKEL 86
           S  + YK LE            T +P   + PE +    D+    +   ++  K EAK +
Sbjct: 270 SLDMDYKPLEPLAPIQEAPVEDTSEPFSSV-PEATLDDSDISTE-SLRKKVLAKMEAKRI 327

Query: 87  GFGKYFTDHMLKIYYHKEL 105
             G  +   + K+Y   EL
Sbjct: 328 SSGSSYASTLRKVYDFSEL 346


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 382 RVGFLEQNIEIPTMK--QSNPVFQRVKDTLLAIQYGHV 417
           RVG++ Q I+I   K  Q++PV+   +   L +++G++
Sbjct: 229 RVGYVHQEIKIDLTKTTQNDPVYDTTERHELEVEFGNI 266


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 305 MVHINDQGDKQLSTPPLNGLILPGVTRRSIIELA-SQWEDIVVREEVITMDRVIQLNQQG 363
           + HI+ +G       P N    P   R  I++   +QW++     E   +D++ +L Q+G
Sbjct: 170 LAHIDAKGIIHRDIKPGNFAWNPYTQRGVILDFGLAQWQEADAPTENCCVDKLRKLKQEG 229

Query: 364 RLLEMF 369
           +  + F
Sbjct: 230 KYYDYF 235


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 43  HVAPSPTQKPHPQITPE-ISFKYEDLQVRLAAPYQLTPKPEAKE 85
           H  P     PH + T E ++   EDL+ + A+  QLT   +A E
Sbjct: 888 HAFPPGPNNPHREKTQEGLNKVLEDLETKKASDVQLTEAEKAAE 931


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 64  YEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQK-PEIMP 115
           Y+  Q  +++P    P P +  + FG Y          H EL  +Q+ P +MP
Sbjct: 312 YQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMP 364


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 57  TPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGG 107
           TPE+    ED    L+   ++  KP  ++  +G+   DH + IY+ K +GG
Sbjct: 172 TPEVKMLDEDT---LSVDGKIIKKPYVEKPVYGE---DHNIYIYFPKSVGG 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,184
Number of Sequences: 5004
Number of extensions: 85582
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 10
length of query: 426
length of database: 2,362,478
effective HSP length: 75
effective length of query: 351
effective length of database: 1,987,178
effective search space: 697499478
effective search space used: 697499478
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)