Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0040 - 353861-353981,354618-354730,355034-355129,355406-35... 192 5e-49
03_02_0258 + 6915645-6915785,6915950-6916020,6916157-6916337,691... 176 3e-44
10_08_0846 + 21001125-21001235,21001492-21001580,21001715-210018... 132 4e-31
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 120 2e-27
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 37 0.027
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173... 36 0.047
03_03_0017 - 13774877-13775005,13775333-13775368,13776147-137762... 36 0.082
01_01_0978 + 7738232-7740848,7740929-7741320 34 0.25
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 30 4.1
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 29 7.1
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 29 7.1
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 29 9.4
>03_01_0040 -
353861-353981,354618-354730,355034-355129,355406-355522,
356071-356169,356416-356547,356651-356827,356949-357123,
357225-357313,357981-358079
Length = 405
Score = 192 bits (468), Expect = 5e-49
Identities = 118/336 (35%), Positives = 183/336 (54%), Gaps = 16/336 (4%)
Query: 84 KELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRG 143
+ LGFG TD M + G + K E++PF + + P+A L+Y LFEGLKAYR
Sbjct: 74 ENLGFGLVQTDFMYIAKCGPD-GNFSKGEMVPFGPIELSPSAGVLNYGQGLFEGLKAYRK 132
Query: 144 VDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIR 203
D I LFRPE N RM A+R +P E+ V +K+ V ++ WVP + +LYIR
Sbjct: 133 TDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRWVPPTGKGSLYIR 192
Query: 204 PTLIGIEPTFGIMAPESALLFVILSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKV 263
P L+G G+ + +SPV Y+K +++ + N RA PGG G K
Sbjct: 193 PLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGL-APINLIIEENFHRAAPGGTGGVKT 251
Query: 264 GSNYGPTIEATARAAKLGHHQVLWLFGPDHQ-LTEVGAMNIFMVHINDQGDKQLSTPPLN 322
NY ++A A + G+ VL+L + L EV + NIF+V N +STP +
Sbjct: 252 IGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGN-----VISTPAIK 306
Query: 323 GLILPGVTRRSIIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISR 382
G ILPG+TR+SI+E+A Q + +V E ++++D +++ + E+F GTAV++SP+
Sbjct: 307 GTILPGITRKSILEVA-QRKGFMVEERLVSVDELLEAD------EVFCTGTAVVVSPVGS 359
Query: 383 VGFLEQNIEIPTMKQSNPVFQRVKDTLLAIQYGHVE 418
+ +L Q +E + V Q++ +L ++Q GHV+
Sbjct: 360 ITYLGQRVEYGN-QGVGVVCQQLYTSLTSLQMGHVD 394
>03_02_0258 +
6915645-6915785,6915950-6916020,6916157-6916337,
6916461-6916643,6916753-6916884,6916986-6917084,
6917381-6917593,6917746-6917858,6917959-6918073
Length = 415
Score = 176 bits (428), Expect = 3e-44
Identities = 116/337 (34%), Positives = 176/337 (52%), Gaps = 20/337 (5%)
Query: 86 LGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVD 145
LGFG TD+M + E G + + E+ + N+ + P++ ++Y LFEGLKAYR +
Sbjct: 85 LGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLKAYRAAN 144
Query: 146 DK--IRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIR 203
+ LFRPE N RM A+R +P E+ V +K+ V ++ WVP LYIR
Sbjct: 145 QQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRRWVPPQGKGALYIR 204
Query: 204 PTLIGIEPTFGIM-APESALLFVILSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRK 262
P LIG P G+ APE L + +PV Y+K +++ + ++ RA PGG G K
Sbjct: 205 PLLIGSGPILGLAPAPEYTFL-IYAAPVGTYFKEGL-APINLVVEDSIHRAMPGGTGGVK 262
Query: 263 VGSNYGPTIEATARAAKLGHHQVLWLFGPDH-QLTEVGAMNIFMVHINDQGDKQLSTPPL 321
+NY P ++A A G VL+L L E + N+F+V D ++TP
Sbjct: 263 TITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVK-----DGVVATPAT 317
Query: 322 NGLILPGVTRRSIIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPIS 381
G ILPG+TR+S+IELA V E ++++D ++ + E+F GTAV+++P+S
Sbjct: 318 VGTILPGITRKSVIELARD-RGYQVEERLVSIDDLVGAD------EVFCTGTAVVVAPVS 370
Query: 382 RVGFLEQNIEIPTMKQSNPVFQRVKDTLLAIQYGHVE 418
V + Q E T + + Q + TL +IQ G E
Sbjct: 371 SVTYHGQRYEFRT--GHDTLSQTLHTTLTSIQMGLAE 405
>10_08_0846 +
21001125-21001235,21001492-21001580,21001715-21001871,
21002076-21002186,21002282-21002413,21002686-21002784,
21003193-21003309,21004411-21004506,21004919-21005031,
21005589-21005709
Length = 381
Score = 132 bits (320), Expect = 4e-31
Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 16/265 (6%)
Query: 156 NMERMNLAAQRSGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIRPTLIGIEPTFGI 215
N RM A+R +P E+ V +K+ V ++ WVP + +LYIRP L+G G
Sbjct: 121 NALRMRTGAERMCMPAPSVEQFVDAVKQTVLANKRWVPPTGKGSLYIRPLLMGSGAVLG- 179
Query: 216 MAPESALLFVI-LSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEAT 274
+AP F+I +SPV Y+K +++ + RA PGG G+ K NY + A
Sbjct: 180 LAPAPEYTFIIFVSPVGNYFKEGL-APINLIVEDKFHRATPGGTGSVKTIGNYASVLMAQ 238
Query: 275 ARAAKLGHHQVLWLFGPDHQ-LTEVGAMNIFMVHINDQGDKQLSTPPLNGLILPGVTRRS 333
A + G+ VL+L + L EV + NIF+V N +STP + G ILPG+TR+S
Sbjct: 239 KIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVKGN-----VISTPAVKGTILPGITRKS 293
Query: 334 IIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRVGFLEQNIEIP 393
II++A + V E ++++D +++ + E+F GTAV++SP+ + + + +E
Sbjct: 294 IIDVALS-KGFQVEERLVSVDELLEAD------EVFCTGTAVVVSPVGSITYQGKRVEYA 346
Query: 394 TMKQSNPVFQRVKDTLLAIQYGHVE 418
K V Q++ +L ++Q G E
Sbjct: 347 GNKGVGVVSQQLYTSLTSLQMGQAE 371
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 120 bits (290), Expect = 2e-27
Identities = 108/335 (32%), Positives = 165/335 (49%), Gaps = 51/335 (15%)
Query: 86 LGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVD 145
LGF TD M + +E G + K E++P+ + ++PAA L+Y L EGL+A+R D
Sbjct: 74 LGFQPVPTDFMYVMRCSEE-GVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLRAHRKED 132
Query: 146 DKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLVQIDQEWVPHSETSTLYIRPT 205
+ LFRP+ N RM + A R +P E+ ++ IK + ++ WVP + +LY
Sbjct: 133 GSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGKGSLY---- 188
Query: 206 LIGIEPTFGIMAPESALLFVILSPVSAYYKASSDGAVSIFADPNVVRAFPGGVGNRKVGS 265
I P ++ A+L V +P + +FA P VG
Sbjct: 189 ---IRP---LLIGSGAILGVAPAPEYTFV---------VFACP--------------VG- 218
Query: 266 NYGPTIEATARAAKLGHHQVLWLFGPDHQ--LTEVGAMNIFMVHINDQGDKQLSTPPLNG 323
+Y + A RA + GH VL+L P H+ + E+ + NIFMV D +STP L G
Sbjct: 219 HYFKAVYAKERAKERGHSDVLYL-DPVHKKFVEELSSCNIFMVK-----DNIISTPLLTG 272
Query: 324 LILPGVTRRSIIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPISRV 383
+LPG+TRRSIIE A V E +IT+D ++ + E+F GT+V++S + +
Sbjct: 273 TVLPGITRRSIIEYARSL-GFQVEECLITIDELLDAD------EVFCTGTSVVLSSVGCI 325
Query: 384 GFLEQNIEIPTMKQSNPVFQRVKDTLLAIQYGHVE 418
+ + +E K V Q++ L AIQ G VE
Sbjct: 326 VYQGRRVEYGNQK-FRTVSQQLYSALTAIQKGLVE 359
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 37.1 bits (82), Expect = 0.027
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 339 SQWEDIVVREEVITMDRVIQLNQQGRLLEMFGAGTAVIISPI 380
S+W ++VV+E +D V N+ RLL++F TA ISP+
Sbjct: 133 SEWAELVVKEMSSALDLVDAKNRAFRLLDLFEKSTAACISPV 174
>04_04_1037 +
30316557-30316692,30317104-30317180,30317287-30317353,
30317761-30317813,30317906-30318322
Length = 249
Score = 36.3 bits (80), Expect = 0.047
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 51 KPHPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQK 110
KP + TP++ ++ D RL P + TPK + +G K T + LK + K G Q
Sbjct: 21 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGM-KGLTLYHLKSHLQKYRLGRQS 79
Query: 111 PEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIRL 150
+ E L + + AL Y +++ L+ V K+++
Sbjct: 80 KKSAGLE-LAVADSGDALKYQVEVQRKLQEQLEVQKKLQM 118
>03_03_0017 -
13774877-13775005,13775333-13775368,13776147-13776227,
13776935-13777006,13777136-13777219,13777323-13777376,
13777496-13777572,13777949-13778000,13778121-13778207,
13778466-13778520,13778600-13778700,13778800-13778988,
13779561-13779629,13779954-13780056,13780167-13780225,
13780548-13780685,13780803-13780895,13780972-13781043,
13781503-13781601,13781792-13781893
Length = 583
Score = 35.5 bits (78), Expect = 0.082
Identities = 69/322 (21%), Positives = 134/322 (41%), Gaps = 31/322 (9%)
Query: 62 FKYEDLQVRLAAPYQLTPKPEAKELGFGK-YFTDHMLKIYYHKELGGWQKPEIMPFENLN 120
F DL + Y + + +K +G + D L + +K++ W E++P ++
Sbjct: 249 FALYDLLEQSLPFYNVLKRHVSKTIGSPQPTLPDPPLPVPENKKILVWVGDELLPRDSAK 308
Query: 121 IHPAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQ- 179
+ + ++EGL+ Y G ++F+ + +++R+ +A+ + ++
Sbjct: 309 VSVFDSVVQGGDAVWEGLRIYDG-----KVFKLDEHLDRLFDSAKAMAFSNVPSRDWIKD 363
Query: 180 CIKRLVQIDQEWVPHSETSTLYIRPTLI-GIEPTFGIMAPESALLFVILSPVSAYYKASS 238
I R + + + + +IR TL G + T G M+P L L +S
Sbjct: 364 AIFRTLNANGMF------NNAHIRLTLTRGKKVTSG-MSPAFNLYGCTLIEWKPPVYDNS 416
Query: 239 DGAVSIFADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHHQVLWLFGPDHQLTEV 298
G + A R P + ++ +N I A L + + D ++E
Sbjct: 417 HGIKLVTATTR--RNSPNSIDSKIHHNNLINNILAKIEG-NLAQAEDAIMLDKDGFVSET 473
Query: 299 GAMNIFMVHINDQGDKQLSTPPLNGLILPGVTRRSIIELASQWEDIVVREEVITMDRVIQ 358
A NIFMV K + P LPG+TR +++ D+VV+E ++ +R I
Sbjct: 474 NATNIFMVK------KGIVLTPHAEYCLPGITRATVM-------DLVVKESLVLHERRIS 520
Query: 359 LNQQGRLLEMFGAGTAVIISPI 380
L++ E++ GT I+P+
Sbjct: 521 LSEFHAADEVWTTGTMGEITPV 542
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 33.9 bits (74), Expect = 0.25
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 251 VRAFPGGVGN-RKVGSNYGPTIEAT--ARAAKLGHHQVLWLFGPDHQLTEVGAMNIFMVH 307
V F GGV R++ +Y P + A L +VLWL G +GA+ +
Sbjct: 182 VPPFLGGVSTLRELNLSYNPFVAGPVPAELGNLSALRVLWLAG----CNLIGAIPASLGR 237
Query: 308 INDQGDKQLSTPPLNGLILPGVTR-RSIIEL 337
+ + D LST L G I P +TR S++++
Sbjct: 238 LGNLTDLDLSTNALTGSIPPEITRLTSVVQI 268
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 29.9 bits (64), Expect = 4.1
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 32 YKELEDSVQADHVAPSPTQKP----HPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELG 87
Y ELED + T H ++ ++S E+L+ AA LT + ++ E
Sbjct: 110 YIELEDGYLVEQEKLRSTMDAENAQHAKLEAQLSSDLEELK---AAHLNLTRQCDSLEES 166
Query: 88 FGKYFTDHMLKI-YYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDD 146
F K D ML + Y KE + E + L++ + H A + E LK + +
Sbjct: 167 FNKEKADRMLAVESYEKERQQRESAE-ASLDLLSV-DLERVSHEAKRFSEQLKMVQDTNK 224
Query: 147 KIRLFRPELNMERMNLAAQRS 167
+++ + L NL A S
Sbjct: 225 RLQEYNTSLQQYNSNLQADAS 245
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 246 ADPNVVRAFPGGVGNRKVGSNYGPTIEATARAAKLGHH 283
ADP+ A GG G RK GS++ + + K H
Sbjct: 161 ADPSAASAGGGGGGGRKAGSSWADSTSGSRGKGKAAEH 198
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 116 FENLNIHPAAKALHYAIQLFEGLKAYRGVDD 146
F N H A+ LH+A QLFE YRG D
Sbjct: 198 FRKSNPHYASLLLHHAQQLFEFADKYRGKYD 228
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 2 PIRRSQVLVKWIFENQHKLQTIRWCSSSLRYKELEDSVQADHVAPSPTQK----PHPQIT 57
PI S+ KW N ++ +R + L+ LE + V PSPT P P+ +
Sbjct: 406 PIMASRPSFKWATANGARIGCVRDYPADLQSMALEHVNLSPRVVPSPTTNRLPIPSPRPS 465
Query: 58 PEI 60
P+I
Sbjct: 466 PKI 468
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,871
Number of Sequences: 37544
Number of extensions: 557126
Number of successful extensions: 1225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 14
length of query: 426
length of database: 14,793,348
effective HSP length: 84
effective length of query: 342
effective length of database: 11,639,652
effective search space: 3980760984
effective search space used: 3980760984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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