GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001237-TA|BGIBMGA001237-PA|IPR001544|Aminotransferase,
class IV, IPR005786|Branched-chain amino acid aminotransferase II
         (426 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    29   0.075
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    25   1.6  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   3.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   6.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 0.075
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 373 TAVIISPISRVGFLEQNIEIPTMKQSNPVFQRVKD 407
           TA+ +SPI+R   ++   +I   K  +P+F  +KD
Sbjct: 65  TAIWLSPINRSPMVDFGYDISDFKDVDPIFGTIKD 99


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 251 VRAFPGGVGNRKVGSNYGPTIEAT 274
           ++A   G+  RKVGS+  P +E T
Sbjct: 21  MKALGVGIMTRKVGSSVSPVVELT 44


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 333 SIIELASQWEDIVVREEVITMDRVIQLNQQGRLLEMFG 370
           ++I  A  + +   R+ V  MD V  L  QGR L  FG
Sbjct: 65  NVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFG 102


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 211 PTFGIMAPESALLFVILSPVSAYYKASSDGAVS 243
           P FG+M   SA++F  L   +AY  A S   ++
Sbjct: 11  PFFGVMGAASAIIFSALG--AAYGTAKSGTGIA 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,338
Number of Sequences: 429
Number of extensions: 5990
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 426
length of database: 140,377
effective HSP length: 60
effective length of query: 366
effective length of database: 114,637
effective search space: 41957142
effective search space used: 41957142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)