GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.19 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    23   1.00 
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    23   1.00 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   4.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   7.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    20   7.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   9.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 50   LNGFNEKQTMMYDRLINSPS 69
            L G+N+ Q   Y RL+N+P+
Sbjct: 1475 LGGWNDSQGDKYSRLVNNPA 1494



 Score = 23.0 bits (47), Expect = 0.75
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 50   LNGFNEKQTMMYDRLINSPS 69
            + G+N+     Y RL+N+PS
Sbjct: 1900 IGGWNDSAGDKYSRLVNNPS 1919



 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 50   LNGFNEKQTMMYDRLINSP 68
            L G+N+     Y RL+N P
Sbjct: 2398 LGGWNDSAGNKYSRLVNDP 2416


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 1.00
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 88  FDNEIMNLLKKHAKNEDKIALR 109
           FDN +  LLKK   NE+   LR
Sbjct: 40  FDNYLQCLLKKGKCNEEAAILR 61


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 1.00
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 88  FDNEIMNLLKKHAKNEDKIALR 109
           FDN +  LLKK   NE+   LR
Sbjct: 40  FDNYLQCLLKKGKCNEEAAILR 61


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 57  QTMMYDRLINSPSNDWDIFYWIVE 80
           Q  M + +IN      D +YW+++
Sbjct: 611 QLCMQNLVINPHQQHLDAWYWVMD 634


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 74  IFYWIVEK-KPTPKEFDNEIMNLLKKHAK 101
           I++  +EK +    EF   +MNLL++ ++
Sbjct: 157 IYHQELEKYEQACNEFTTHVMNLLREQSR 185


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 12  DVEKQQPLEKRKARLHYQSRKRGMLENDL 40
           DVE+   L      +H Q  ++ M   +L
Sbjct: 299 DVEQMNLLHSNDLNMHQQHHQQNMSHEEL 327


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 65  INSPSNDWDIFYWIVEKKPTPKEFDNE 91
           + SP  +   + W+ EKK T K    E
Sbjct: 105 MGSPGVNVPEYPWMKEKKTTRKSSQQE 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,997
Number of Sequences: 317
Number of extensions: 1304
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)