GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    77   9e-16
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.18 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   0.42 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   0.97 
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   1.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   3.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.9  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   3.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   3.9  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   3.9  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    24   5.2  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   5.2  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    24   6.8  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    24   6.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    23   9.0  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 76.6 bits (180), Expect = 9e-16
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 24  ARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKP 83
           ARL YQSRKRG+LE DLLLS FAK  ++ +       YD+L++ P  DWDI YW   ++ 
Sbjct: 50  ARLKYQSRKRGILETDLLLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGERE 107

Query: 84  TPKEF-DNEIMNLLKKHAKNEDKIALRQPDL 113
            P+++  +++   L K+ +++    LR P+L
Sbjct: 108 APEKWKSSQVFKELSKYCRSQRNHTLRMPEL 138


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.1 bits (62), Expect = 0.18
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 29  QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF 88
           + +   ++ +++    F K++   F  K+ +   + I S +++ +IF W  +++   +E 
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246

Query: 89  DNEIMNLLKKHAKNED 104
           DNE +N  KK +  ED
Sbjct: 247 DNEQVNDEKKQSSEED 262


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 51  NGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIALRQ 110
           NG  E +  +  R ++ P+  ++  Y ++  +    EF  ++ +  K+  KNE +IA   
Sbjct: 129 NGTFEYKEYISLRQVDDPNEGYETVYDMMNLQDHIDEFQKQLFSNFKRSNKNECRIAALV 188

Query: 111 P 111
           P
Sbjct: 189 P 189


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 19  LEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWI 78
           LEKRKA LH Q  K       LL   +    L  +   Q   Y  L NS  +D+      
Sbjct: 48  LEKRKAELHAQKLKLVQKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLH 104

Query: 79  VEKKPTPKEFDNEIMNLLKKHAKNEDKIALRQPDL 113
             +   P +     +  + +H ++   +   QP L
Sbjct: 105 TNQLYEPVKRSQNFLTSISEHYRDAKLMHQVQPQL 139


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 12  DVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSN 70
           DV+ ++ L+   A+L  +S K   LE+       A+  LNG  E   ++Y++++N   N
Sbjct: 211 DVQDKR-LQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAIEHAKILYEQILNKDYN 268


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 11  YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKY 49
           Y+V KQQ   + +    + ++KRG+  N+  L   AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 80   EKKPTPKEFDNEIMNLLKKHAKNEDKIA 107
            E K   K   N+I++L KK AK+E   A
Sbjct: 986  EAKKKSKSAANDILHLFKKKAKSEQSNA 1013


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 7   EIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLIN 66
           ++    ++  QP  + K ++  Q  K G+   DL L    KK +   +  Q    D ++N
Sbjct: 797 KLAFQSLDVSQPDLQAKQKIASQVMKHGLKPEDLKLPPSKKKKIENLSTVQKPK-DSVVN 855

Query: 67  SP 68
           +P
Sbjct: 856 TP 857


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 61  YDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKH 99
           Y++L    +ND++     ++      EF N++ NL +KH
Sbjct: 69  YNKLYAKIANDYEFLRLHLQSITKYDEFMNKLWNLYQKH 107


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 84  TPKEFDNEIMNLLKKHAKNEDKIALRQPDL 113
           TP+E D +   ++K  +K ED+  LRQ +L
Sbjct: 123 TPEELDYQ--QIMKSLSKQEDQSPLRQDEL 150


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 48  KYLNGFNEKQ-TMMYDRLINSPSND 71
           K ++ + +K+ + MYD  +N PSND
Sbjct: 111 KAIDQYVDKELSPMYDNYVNKPSND 135


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 23 KARLHYQSRKRGMLENDLLLSTFAKKYLNGFN 54
          K R H  S  R  L++ ++ + F K++++G N
Sbjct: 30 KIRFHGVSLDRKALDSFMVRNNFKKRFVSGIN 61


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 21  KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 80
           +R A  H ++ +   L +  L ++     L  ++ K + +  RL +   N+   F+ +V 
Sbjct: 284 QRVAIHHVRASRLAQLNSGSLKNSTYGFLLGNYSYKNSNL--RLGDLKGNE---FHIVVR 338

Query: 81  KKPTPKEFDNEIMNLLKKH 99
              TPKE   E +N LK+H
Sbjct: 339 NVITPKEKVVEALNSLKEH 357


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 78  IVEKKPTPKEFDNEIMNLLKKHAK 101
           +VEKK T K+FD  + +L +K  +
Sbjct: 40  VVEKKSTDKDFDTFLGDLPEKDCR 63


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 22  RKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIF 75
           R  R  + S++  ++      +   KKYL   +   +   + L   PS+D D++
Sbjct: 95  RNPRKDFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGLFTLPSDDLDVY 148


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
          subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 24 ARLHYQSRKRGMLENDLLLSTFAKKYLN 51
          AR+ Y  +K  +   DL+++TF  K  N
Sbjct: 42 ARVAYLLQKNHIAAEDLIIATFTNKAAN 69


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,669
Number of Sequences: 5004
Number of extensions: 27855
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 16
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)