Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
(114 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085... 38 0.001
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 31 0.17
12_02_1269 + 27462644-27463612 31 0.29
06_03_0778 - 24523780-24526353 29 0.67
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 27 3.6
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 27 3.6
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 27 3.6
08_02_1010 - 23538517-23538750,23539199-23539507,23539902-235400... 27 4.7
04_01_0367 + 4834602-4835489,4836117-4836644 26 6.2
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169... 26 6.2
>11_05_0034 +
18507023-18507243,18507347-18507473,18508463-18508531,
18508620-18508763
Length = 186
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/109 (22%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 12 DVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSND 71
D+ + + RL Y+S++RG LE DL+L T+ +++++ +E ++++ +
Sbjct: 61 DLSSDESRRRLINRLVYRSKQRGFLELDLVLGTWVEQHIHSMDEANIRALLQVLDLENP- 119
Query: 72 WDIFYWIVEKKPTPKEFD---------NEIMNLLKKHAKNEDKIALRQP 111
D++ W+ ++ P+ + +++ + L KH+ E + A QP
Sbjct: 120 -DLWKWLTSQEQPPEAVNSNPVFIAVKSKVTDNLSKHSSPETRSAPGQP 167
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 31.5 bits (68), Expect = 0.17
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 37 ENDLLLST--FAKKYLNGFNEKQTMMYDRLINSPSNDW----DIFYWIVEKKPTPKEFDN 90
E+DL+ + F+ L +K MY+R IN P+ W D FYW ++K P E +
Sbjct: 49 EHDLVYPSAEFSADALVPSPKKYQKMYERSINDPAGFWSEIADAFYW--KEKWNPSEVCS 106
Query: 91 EIMNLLK 97
E +++ K
Sbjct: 107 ENLDVTK 113
>12_02_1269 + 27462644-27463612
Length = 322
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 20 EKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW----DIF 75
E+R RL + R R ++EN L A+ +Q ++ N+PS DW D
Sbjct: 115 ERRSYRLTFHRRHRALVENAYLPHVLAEGRAVTVRNRQRRLF---TNNPSADWSAYDDAR 171
Query: 76 YWIVEKKPTPKEFDNEIMNLLKKHAKNED 104
W K P F M+ ++K +D
Sbjct: 172 VWSHVKLEHPSTFATLAMDPVRKQEIIDD 200
>06_03_0778 - 24523780-24526353
Length = 857
Score = 29.5 bits (63), Expect = 0.67
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 26 LHYQSRKRGMLENDLLLSTFAKKYL-------------NGFNEKQTMMYD--RLINSPSN 70
LH + R+R ++D+++ F +K L GF E + + L++SP
Sbjct: 490 LHRRIRRRSSSDHDMVMRLFTRKELYDATNGFQRLLGRGGFGEVYHGVANSLHLLHSPDT 549
Query: 71 DWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKN 102
D + IV + T +EF NE+ ++ + H ++
Sbjct: 550 DIAVKKLIVSNEYTEREFANEVQSIGRIHHRS 581
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 49 YLNGFNEKQTMMYD 62
Y+NGFNE+ T+ YD
Sbjct: 342 YVNGFNEEDTLYYD 355
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 49 YLNGFNEKQTMMYD 62
Y+NGFNE+ T+ YD
Sbjct: 297 YVNGFNEEDTLYYD 310
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 VEKQQPLEKRKARLHYQSRKRGMLENDLL--LSTFAKKYLNGFNEK 56
+E Q L+K K L + R GM + DL+ L T AK + F EK
Sbjct: 165 LEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 210
>08_02_1010 -
23538517-23538750,23539199-23539507,23539902-23540063,
23540521-23540710,23540881-23541059,23541155-23541298
Length = 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 4 TYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFA 46
T + IP +D+ QP K L Y+ K +L +D+ +ST A
Sbjct: 150 TNVVIPTFDIANLQPTIFSKFELKYKPLKNALL-SDISISTSA 191
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 85 PKEFDNEIMNLLKKHAKNEDKIALRQPDL 113
P+ DN + ++H KN D + L +P+L
Sbjct: 402 PRARDNPLEFRPERHLKNTDNVVLAEPEL 430
>02_05_0607 -
30315982-30316215,30316688-30316831,30316902-30316989,
30317829-30317934,30318398-30318552,30318630-30318699,
30319940-30320106,30320827-30320894,30322764-30322867,
30322937-30323107,30323113-30323238,30323496-30323663,
30323725-30323908,30324139-30324534
Length = 726
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 88 FDNEIMNLLKKHAKNEDKIALRQPD 112
+D+E+M +LK+ +DK +LR D
Sbjct: 380 YDDEVMAMLKERVAQKDKKSLRMVD 404
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,455
Number of Sequences: 37544
Number of extensions: 133147
Number of successful extensions: 294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 10
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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