Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
(114 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open read... 128 5e-30
AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens ... 128 5e-30
BC117445-1|AAI17446.1| 546|Homo sapiens LOC129881 protein protein. 31 1.1
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 30 1.4
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 30 1.4
BC098305-1|AAH98305.1| 272|Homo sapiens SMYD2 protein protein. 28 5.9
BC098276-1|AAH98276.1| 433|Homo sapiens SET and MYND domain con... 28 5.9
BC094747-1|AAH94747.1| 361|Homo sapiens SMYD2 protein protein. 28 5.9
BC028104-1|AAH28104.1| 417|Homo sapiens SMYD2 protein protein. 28 5.9
AL929236-2|CAH70920.1| 433|Homo sapiens SET and MYND domain con... 28 5.9
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 28 7.7
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 28 7.7
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 28 7.7
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 28 7.7
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 28 7.7
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 28 7.7
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 28 7.7
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 28 7.7
>BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open reading
frame 79 protein.
Length = 166
Score = 128 bits (308), Expect = 5e-30
Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Query: 6 MEIPL--YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDR 63
+EIPL + + +E ++ARL Y+SRKRGMLEN +LLS FAK++L EKQ +YDR
Sbjct: 48 IEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDR 107
Query: 64 LINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPDL 113
LIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR PDL
Sbjct: 108 LINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
>AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ20487 fis, clone KAT08245. ).
Length = 166
Score = 128 bits (308), Expect = 5e-30
Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Query: 6 MEIPL--YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDR 63
+EIPL + + +E ++ARL Y+SRKRGMLEN +LLS FAK++L EKQ +YDR
Sbjct: 48 IEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDR 107
Query: 64 LINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPDL 113
LIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR PDL
Sbjct: 108 LINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
>BC117445-1|AAI17446.1| 546|Homo sapiens LOC129881 protein protein.
Length = 546
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 10 LYDVEKQQPLEKRKARLHYQSRKRGM--LENDLLLSTFAKKYLNGFNEKQTMMY---DRL 64
LY++E ++ LEK++ +H +SR+R + +++ ++ ++ +EK RL
Sbjct: 243 LYEIEMRKKLEKKREEMH-ESRRRFLEHMQDKHIIKAVEQQQQEEEDEKMRKFIKAKKRL 301
Query: 65 INSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIALR 109
I + ++EK+ + N + LLK+ NED I R
Sbjct: 302 IQMGKEKEAETHRLMEKR--RERIHNFLSELLKEKLDNEDMIIAR 344
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 33 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNE 91
+G LEN ++ + +Y+ N E +M + + SND DI+Y++ E P+E +
Sbjct: 251 KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 310
Query: 92 I 92
I
Sbjct: 311 I 311
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens
cDNA FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 33 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNE 91
+G LEN ++ + +Y+ N E +M + + SND DI+Y++ E P+E +
Sbjct: 5 KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 64
Query: 92 I 92
I
Sbjct: 65 I 65
>BC098305-1|AAH98305.1| 272|Homo sapiens SMYD2 protein protein.
Length = 272
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 DVEKQQPLEKRKARLH-YQSRKRGMLENDLLLSTFAKKYLNGF 53
D EK+ ++ A LH + S+ G +ND L+ FA+ NGF
Sbjct: 142 DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGF 184
>BC098276-1|AAH98276.1| 433|Homo sapiens SET and MYND domain
containing 2 protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 DVEKQQPLEKRKARLH-YQSRKRGMLENDLLLSTFAKKYLNGF 53
D EK+ ++ A LH + S+ G +ND L+ FA+ NGF
Sbjct: 142 DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGF 184
>BC094747-1|AAH94747.1| 361|Homo sapiens SMYD2 protein protein.
Length = 361
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 DVEKQQPLEKRKARLH-YQSRKRGMLENDLLLSTFAKKYLNGF 53
D EK+ ++ A LH + S+ G +ND L+ FA+ NGF
Sbjct: 142 DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGF 184
>BC028104-1|AAH28104.1| 417|Homo sapiens SMYD2 protein protein.
Length = 417
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 DVEKQQPLEKRKARLH-YQSRKRGMLENDLLLSTFAKKYLNGF 53
D EK+ ++ A LH + S+ G +ND L+ FA+ NGF
Sbjct: 126 DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGF 168
>AL929236-2|CAH70920.1| 433|Homo sapiens SET and MYND domain
containing 2 protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 DVEKQQPLEKRKARLH-YQSRKRGMLENDLLLSTFAKKYLNGF 53
D EK+ ++ A LH + S+ G +ND L+ FA+ NGF
Sbjct: 142 DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGF 184
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 31 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDN 90
RK+ +L D+ +T K N + ++ + S N WD + +K KEF N
Sbjct: 740 RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFTN 799
Query: 91 ---EIMNLLKKHAKNEDKI 106
+++ + K K +D I
Sbjct: 800 VAESLISQINKRYKTKDDI 818
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,129,481
Number of Sequences: 224733
Number of extensions: 702029
Number of successful extensions: 1296
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 18
length of query: 114
length of database: 73,234,838
effective HSP length: 80
effective length of query: 34
effective length of database: 55,256,198
effective search space: 1878710732
effective search space used: 1878710732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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