GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.51 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   6.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   6.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 14  EKQQPLEKRKARLHYQSRKRGMLEND 39
           ++QQP ++++ +   Q ++RG + ND
Sbjct: 837 QQQQPQQQQQQQQQQQQQQRGPMTND 862


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 17 QPLEKRKARLHYQSRKRGML 36
          QP+ KRK + H + + + +L
Sbjct: 63 QPISKRKDKEHKKKKSKTIL 82


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)

Query: 26  LHYQSRKRGML 36
           LHY+S++RG +
Sbjct: 131 LHYRSKRRGFV 141


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 17 QPLEKRKARLHYQSRKRGML 36
          QP+ KRK + H + + + +L
Sbjct: 63 QPISKRKDKEHKKKKSKTIL 82


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 9   PLYDVEKQQPLEKRKAR 25
           P+Y VEK+ P     AR
Sbjct: 296 PVYQVEKRSPFRYLGAR 312


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,051
Number of Sequences: 429
Number of extensions: 1564
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)