Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001236-TA|BGIBMGA001236-PA|IPR005631|Protein of unknown
function DUF339
(114 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51040.1 68418.m06327 expressed protein 46 5e-06
At1g60300.1 68414.m06790 apical meristem formation protein-relat... 29 0.99
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 28 1.3
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi... 28 1.7
At5g01120.1 68418.m00016 hypothetical protein contains Pfam prof... 27 2.3
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 27 3.0
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format... 27 4.0
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format... 27 4.0
At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP glucosyl... 26 5.3
At3g02570.1 68416.m00248 phosphomannose isomerase type I family ... 26 5.3
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l... 26 5.3
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 26 5.3
At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UD... 26 7.0
At1g54430.1 68414.m06209 hypothetical protein 26 7.0
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 25 9.2
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 25 9.2
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 25 9.2
At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family prot... 25 9.2
At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containi... 25 9.2
>At5g51040.1 68418.m06327 expressed protein
Length = 188
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 11 YDVEKQQPLEKRKA--RLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSP 68
+D++ KR+ RL Y+S++RG LE DL+L + ++ +N +E ++N
Sbjct: 59 FDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLE 118
Query: 69 SNDWDIFYWIVEKKPTPKEFDN---------EIMNLLKKHAKNEDKIALRQP 111
+ D++ W+ E++ P+ + ++M L KHA E + A QP
Sbjct: 119 NP--DLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQP 168
>At1g60300.1 68414.m06790 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 322
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 27 HYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW 72
H+ + +LEN+LL S YL+ E+ D ++ S N+W
Sbjct: 161 HFYTTSESVLENELLPSY--GYYLSNTQEEDEFYLDAIMTSEGNEW 204
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 72 WDIFYWIVEKKPTPKEFDNEIMNLLK 97
WD+ Y ++EK+ PK +N + +L K
Sbjct: 1701 WDVLYNLLEKESDPKVLENILYHLCK 1726
>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 19 LEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGF---NEKQTMMYDRLINSPSNDWDIF 75
LEK K LH + + M+ N L+L FA L F +E + + Y I + +IF
Sbjct: 60 LEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIF 119
Query: 76 YWIV 79
W V
Sbjct: 120 SWNV 123
>At5g01120.1 68418.m00016 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 510
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 51 NGFNEKQT--MMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHA 100
+GF ++ T M+ D LI +PSN ++ EK+ E + ++N+ K+ A
Sbjct: 416 SGFVKRGTKFMVTDDLIINPSNSTSTIGFLKEKQTRLDEVEIRVINMTKEEA 467
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 69 SNDWDIFYW-IVEKKPTPKEFDNEI 92
SND+DI W +V K PT K +I
Sbjct: 203 SNDFDIAIWVVVSKNPTVKRIQEDI 227
>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 VEKQQPLEKRKARLHYQSRKRGMLENDLL--LSTFAKKYLNGFNEK 56
+E Q L+K K L + R GM + DL+ L T AK + F EK
Sbjct: 137 LEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 182
>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 VEKQQPLEKRKARLHYQSRKRGMLENDLL--LSTFAKKYLNGFNEK 56
+E Q L+K K L + R GM + DL+ L T AK + F EK
Sbjct: 137 LEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 182
>At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP
glucosyltransferase (SUS1) identical to SP|P49040
Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
glucosyltransferase) {Arabidopsis thaliana}
Length = 808
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 65 INSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIAL 108
I SP D I++ E+K +F +EI LL +N++ + +
Sbjct: 523 IVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCV 566
>At3g02570.1 68416.m00248 phosphomannose isomerase type I family
protein contains Pfam profile: PF01238 phosphomannose
isomerase type I
Length = 432
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 19 LEKRKARLHYQSRKRGMLENDLLLSTFAKKYLN 51
+ K K RLH +S++R + + + L+ K+Y N
Sbjct: 227 VSKLKRRLHMESQERQLTDKERLVLKLEKQYPN 259
>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3)
low similarity to huntingtin interacting protein 1
[Homo sapiens] GI:12697196; contains Pfam profile
PF00856: SET domain; identical to cDNA ASH1-like
protein 3 (ASHH3) partial cds GI:15488419
Length = 363
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 60 MYDRLINS--PSNDWDIFYWIVEKKPTPKEFDNEIMNLLKK 98
++D+L+N S ++++ W+ + KPTP F + L KK
Sbjct: 16 VFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKK 56
>At2g26910.1 68415.m03228 ABC transporter family protein similar
to PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 56 KQTMMYDRLINSPSNDWDIFYWIVEKK 82
+Q ++ DRL+NS ND + F+ V K+
Sbjct: 63 EQRLLLDRLVNSVENDPEQFFARVRKR 89
>At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative strong similarity to
SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
glucosyltransferase) {Arabidopsis thaliana} (SUS1)
Length = 808
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 65 INSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIAL 108
I SP D I++ E+K F EI LL +NE+ + +
Sbjct: 523 IVSPGADMSIYFAYTEEKRRLTAFHLEIEELLYSDVENEEHLCV 566
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 51 NGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKHAKNEDKIA 107
N NE+Q ++YD ++ S N +++ T K F I++ L+ + KN +A
Sbjct: 1149 NKLNEQQRIIYDDVLKSVINKEGKLFFLYGAGGTGKTFLYKTIISALRSNGKNVMPVA 1206
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 20 EKRKARLHYQSRKRGMLENDLLLST 44
E+ ++RLH+ K G N +++ST
Sbjct: 80 ERSRSRLHHSDTKNGDCSNGMIVST 104
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 67 SPSND--WDIFYWIVEKKPTPKEFDNEIMN 94
SP+N WD F+ +VE P P D E+ N
Sbjct: 191 SPANSMAWDYFF-MVENMPGPNLDDREVRN 219
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 54 NEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKHAKNEDKIA 107
NE+Q ++YD ++ S +N +++ T K F I++ L+ + KN +A
Sbjct: 350 NEQQRIIYDDVLKSVTNKEGKLFFLYGDGGTGKTFLYKTIISALRSNGKNVMPVA 404
>At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 344
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 64 LINSPSNDWDIFYWI-----VEKKPTPKEFDNEIMNLLKKHAKNEDKIALRQ 110
+IN SND+ Y++ +++ TPK++ ++ + + H KN ++ R+
Sbjct: 151 MINIGSNDYINNYFMSKPYNTKRRYTPKQYAYSLIIIYRSHLKNLHRLGARK 202
>At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 467
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 26 LHYQSRKRGMLENDLLLSTFAKKYLN-GFNEKQTMMYDRLIN 66
LH Q+ KRG L + + ++F + Y G E M+D ++N
Sbjct: 108 LHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILN 149
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,169
Number of Sequences: 28952
Number of extensions: 126213
Number of successful extensions: 350
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 19
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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