Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001235-TA|BGIBMGA001235-PA|IPR001474|GTP cyclohydrolase
I
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...   248   4e-67
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   4.1  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   5.4  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    25   7.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   7.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   9.4  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score =  248 bits (608), Expect = 4e-67
 Identities = 114/184 (61%), Positives = 147/184 (79%)

Query: 46  EALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE 105
           E  +  ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E
Sbjct: 49  EEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQE 108

Query: 106 DTDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQER 165
           D +EMV+V+DI++FS+CEHHLVPF GK+ IGY+P+ ++LGLSKLARI  +FSRRLQVQER
Sbjct: 109 DHEEMVIVRDIDVFSLCEHHLVPFIGKIHIGYIPRKRVLGLSKLARIANMFSRRLQVQER 168

Query: 166 LTKQIAIAVTQAVRPAGVAVVIEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTREEF 225
           LTKQ+A A+   ++P GVAVV+E  HMCMVMRGV+K  S TVTS++ G+F+   KTREEF
Sbjct: 169 LTKQVAQAIQAVLKPQGVAVVMEATHMCMVMRGVEKPGSSTVTSSLTGIFQRSHKTREEF 228

Query: 226 LNLV 229
             L+
Sbjct: 229 FRLI 232


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 96  EVLNNAIFDEDTDEMVVVKDIEMFSMCE 123
           E+L +A  D +TD M+ + +IE F + E
Sbjct: 92  ELLRSASHDNNTDAMLYLANIEFFGLFE 119


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 72  LLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHHLVPFYG 131
           LLK     AK  LF     D+       N +F+      +   DIE F+     ++PFY 
Sbjct: 25  LLKLKVELAKQNLFVPTS-DKEKASFARN-VFEYGVLVSIQTCDIESFARYASQVIPFYH 82

Query: 132 KVSIGYLPQGKILGLSKLARIVE 154
              +     G + GL+ L  + E
Sbjct: 83  DSLVPSSRMGLVTGLNLLYLLSE 105


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 131 GKVSIG---YLPQGKILGLSKLARIVEIFSRRLQVQERLTKQ 169
           G +++G   Y+P+G+++G+     +++     L+ +E L K+
Sbjct: 52  GTITVGFPKYVPEGEVIGVEPSQELLDKAEEALRKEETLKKE 93


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 24  VGGHENCTFHHDLELDHRPPTREALLPDMANSYRLLLTGLGEDP 67
           + GH    FHH++ +   P     L   + N    ++ GL   P
Sbjct: 249 IAGHLVDFFHHEVSVGRLPKNLHPLQSGIGNIANAIIGGLAHSP 292


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 90   YDQSLEEVLNNAIFDEDTDEMVVVKDI 116
            Y +SL  +LNN I D  T+E  V KD+
Sbjct: 3007 YYKSLVWMLNNDITDIITEEFAVEKDV 3033


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 26  GHENCTFHHDLELDHRPPTREALLPDM 52
           G+   T + D+ L   P T EA  PDM
Sbjct: 546 GYFEATLYKDISLSIMPATMEAKSPDM 572


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,300
Number of Sequences: 5004
Number of extensions: 38959
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)