Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001235-TA|BGIBMGA001235-PA|IPR001474|GTP cyclohydrolase
I
(232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 31 1.0
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978... 31 1.0
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 30 1.4
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 29 2.4
07_01_0866 - 7195305-7195756,7197171-7197447 29 3.2
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 3.2
04_03_0664 + 18501248-18502802,18503370-18505054 29 3.2
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 29 4.2
01_05_0082 - 17972276-17973268 28 7.4
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 27 9.8
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 27 9.8
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 27 9.8
03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95... 27 9.8
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 66 DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 115
DP+ A +++ PER + L+FT + + SL VL FDE D +E +V K+
Sbjct: 858 DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 909
>01_06_0907 -
32897168-32897476,32897547-32897621,32897716-32897883,
32898156-32898213,32898286-32898527,32898630-32898726,
32898827-32898921
Length = 347
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 66 DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 115
DP+ A +++ PER + L+FT + + SL VL FDE D +E +V K+
Sbjct: 143 DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 194
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 109 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGL 146
++V+ +DI+M + + H F GK +G+ GKIL L
Sbjct: 876 KLVLDRDIDMMTTGQRH--SFLGKYKVGFTDDGKILAL 911
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 38 LDHRPPTREALLPDMANSYRLLLTGLGEDPERAG 71
++ RPP A P + +R LL + +PERAG
Sbjct: 1 METRPPRAAAPAPARVSRFRRLLVRVSAEPERAG 34
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/88 (25%), Positives = 34/88 (38%)
Query: 42 PPTREALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNA 101
P + ALL +A + LL GE+ A P A + + GYD +++
Sbjct: 60 PQSATALLHLLAVALLHLLPHQGEEAPLAAAAADPAPATRREVVLCIGYDDDDLALVDVT 119
Query: 102 IFDEDTDEMVVVKDIEMFSMCEHHLVPF 129
D D M ++I + H PF
Sbjct: 120 YPKRDVDNMQWFREITLLYRGHRHSAPF 147
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 91 DQSLEEVLNNAI--FDEDTDEMVVVK-DIEMFS 120
++ E+L N I FDEDTDE+ ++K ++E FS
Sbjct: 1576 EEECRELLENDIEDFDEDTDEIPIIKLNMEAFS 1608
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 110 MVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQERLTKQ 169
++ + +E+ S C H L G + L + K++G +KL + + S+R Q E Q
Sbjct: 873 LIALSCLEIVS-C-HELADLNGMEELTSLTELKVIGCNKLEELPVVSSQRFQASEH--NQ 928
Query: 170 IAIAVTQAVRPAGVAVVIEG-VHMCMVMRGVQKINSKTVTS 209
+ A T +R + + V +R V + + T+ S
Sbjct: 929 VVTACTSYLRKLKRLQISDPFVLQWAPLRSVTSVTNMTINS 969
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 45 REALLPDMANSYRLLLTGLGED 66
REA LPD+ SY ++TGL E+
Sbjct: 702 REARLPDLRTSYLTIMTGLTEN 723
>01_05_0082 - 17972276-17973268
Length = 330
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 73 LKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHHLVPFYGK 132
+KTPE A A +F K Y ++ +LN D V + + ++ C + P YG
Sbjct: 28 IKTPEAQANATVFLAKFYGRA--GLLNLLAAGPDHLRPAVFRSL-LYEACGRIVNPIYGS 84
Query: 133 VSI 135
V +
Sbjct: 85 VGL 87
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 80 AKAMLFFTKGYDQSLE-EVLNNAIFDEDTDEMVVVKDIE 117
A A++ F Y+ + +V+N+ IF +D DE+ V D E
Sbjct: 265 ASALISFKMKYESFTKGDVINSVIFVDDDDELPVFCDAE 303
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 132 KVSIGYLPQGKILGLSKLARIVEIFSRRLQVQERLTKQIAIAVTQAVRPAGVAVVIEGVH 191
K+SIG LP+ +L L ++ + + RL +Q +GV +V+E +
Sbjct: 263 KLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQALERHEDQFLKSGVYLVLEKLE 322
Query: 192 MCMVMRGVQKIN 203
+ + R V+KI+
Sbjct: 323 LQVYQRLVKKIH 334
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 101 AIFDEDTDEMVVVKDIEMFSMCEHH 125
A+FD+D DE +KD++ ++ + H
Sbjct: 2 ALFDDDDDEFPQLKDVDQYACKDSH 26
>03_01_0122 +
954356-954491,954877-955030,955141-955231,
955732-955806,955884-955972,956084-956202,
956338-956478,956817-956893,958615-959217
Length = 494
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 41 RPPTREALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAK 81
R P+R + P A S ++ LGEDP R +L T +A K
Sbjct: 27 RRPSRRSACPRSAASRLSIMAALGEDPIRQWIL-TEGKATK 66
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,494,849
Number of Sequences: 37544
Number of extensions: 255429
Number of successful extensions: 536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 13
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
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