GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001235-TA|BGIBMGA001235-PA|IPR001474|GTP cyclohydrolase
I
         (232 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)              130   7e-31
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 30   1.9  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_54931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_36123| Best HMM Match : APC_15aa (HMM E-Value=3.8)                  27   10.0 
SB_33187| Best HMM Match : rve (HMM E-Value=1.1)                       27   10.0 
SB_30542| Best HMM Match : APC_15aa (HMM E-Value=3.8)                  27   10.0 

>SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score =  130 bits (315), Expect = 7e-31
 Identities = 54/81 (66%), Positives = 72/81 (88%)

Query: 52  MANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMV 111
           ++ +Y  +L+ +GED +R GLLKTPERAAKAML+FTKGY++ ++E+LN+A+FDED DE+V
Sbjct: 50  ISKAYETILSNIGEDKDRQGLLKTPERAAKAMLYFTKGYEEKVQEILNDAVFDEDHDELV 109

Query: 112 VVKDIEMFSMCEHHLVPFYGK 132
           +VKDIEMFS+CEHHLVPF GK
Sbjct: 110 IVKDIEMFSLCEHHLVPFMGK 130



 Score =  107 bits (258), Expect = 6e-24
 Identities = 49/70 (70%), Positives = 60/70 (85%)

Query: 163 QERLTKQIAIAVTQAVRPAGVAVVIEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTR 222
           QERLTKQIA+A+ +AV PAGV VVIE  HMCMVMRGVQK +S+TVTS MLGV R+DP++R
Sbjct: 253 QERLTKQIAMAIVEAVNPAGVGVVIEAKHMCMVMRGVQKPSSETVTSCMLGVLREDPRSR 312

Query: 223 EEFLNLVHSK 232
           +EFL L+H +
Sbjct: 313 DEFLTLIHKR 322


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 123 EHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQERLTKQIAIAVTQAVRPAG 182
           E H+V FYG  ++G +  G +   S   + +EI ++R ++ E  ++  ++       P G
Sbjct: 275 EDHIVNFYGSENLGTVRAGALSDSSLERQRLEIEAKREEINEIPSQHQSL-----TNPDG 329

Query: 183 VAVVIEGVHMCMVMRGVQKINSKTV 207
             V    V +C + R   KIN  TV
Sbjct: 330 AFVA--DVFLCQIQR---KINDATV 349


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 22 RQVGGHENCTFHHDLELDHRPPTREALLPDM 52
          + +G +E  T    +EL   PP R+ L+P M
Sbjct: 30 KMIGENERLTIKSKVELSRLPPCRDNLVPHM 60


>SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 65  EDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDI 116
           ED    G LKTP  ++ A   +  G +    EV     F+ED+DE  V+ D+
Sbjct: 277 EDLALNGSLKTPIPSSDATSPWNGGRESGDNEVEYADDFEEDSDEEEVLDDL 328


>SB_54931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 35  DLELDHRPPTREALLPDMANSYRLLLTGLGED 66
           DLE+ +R  T   L   ++ +Y++L TG+ E+
Sbjct: 69  DLEVSYRKGTEMVLADTLSRAYKVLPTGVAEE 100


>SB_36123| Best HMM Match : APC_15aa (HMM E-Value=3.8)
          Length = 143

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 22 RQVGGHENCTFHHDLELDHRPPTREALLPDM 52
          + +G +E  T    +EL   PP R+ L+P M
Sbjct: 30 KMIGENERLTIKSKVELSRLPPCRDNLVPHM 60


>SB_33187| Best HMM Match : rve (HMM E-Value=1.1)
          Length = 268

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 35  DLELDHRPPTREALLPDMANSYRLLLTGLGED 66
           DLE+ +R  T   L   ++ +Y++L TG+ E+
Sbjct: 69  DLEVSYRKGTEMVLADTLSRAYKVLPTGVAEE 100


>SB_30542| Best HMM Match : APC_15aa (HMM E-Value=3.8)
          Length = 152

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 22 RQVGGHENCTFHHDLELDHRPPTREALLPDM 52
          + +G +E  T    +EL   PP R+ L+P M
Sbjct: 39 KMIGENERLTIKSKVELSRLPPCRDNLVPHM 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,461,942
Number of Sequences: 59808
Number of extensions: 284882
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 16,821,457
effective HSP length: 80
effective length of query: 152
effective length of database: 12,036,817
effective search space: 1829596184
effective search space used: 1829596184
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)