GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001235-TA|BGIBMGA001235-PA|IPR001474|GTP cyclohydrolase
I
         (232 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical pr...   292   2e-79
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate cyc...    29   3.7  
AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical ...    29   3.7  
U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical
           protein F32G8.6 protein.
          Length = 223

 Score =  292 bits (716), Expect = 2e-79
 Identities = 138/188 (73%), Positives = 160/188 (85%)

Query: 45  REALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFD 104
           +E  L  M N+Y+ ++  +GED  R GLLKTPERAAKAM+ FTKGYD  L+E+LN A+FD
Sbjct: 36  KEDHLKSMCNAYQSIIQHVGEDINRQGLLKTPERAAKAMMAFTKGYDDQLDELLNEAVFD 95

Query: 105 EDTDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQE 164
           ED DEMV+VKDIEMFS+CEHHLVPF GKV IGY+P  K+LGLSKLARIVE+FSRRLQVQE
Sbjct: 96  EDHDEMVIVKDIEMFSLCEHHLVPFMGKVHIGYIPNKKVLGLSKLARIVEMFSRRLQVQE 155

Query: 165 RLTKQIAIAVTQAVRPAGVAVVIEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTREE 224
           RLTKQIA A+ QAV+P+GVAVVIE  HMCMVMRGVQKIN+ T TS MLGVFRDDPKTREE
Sbjct: 156 RLTKQIATAMVQAVQPSGVAVVIEASHMCMVMRGVQKINASTTTSCMLGVFRDDPKTREE 215

Query: 225 FLNLVHSK 232
           FLNL++ +
Sbjct: 216 FLNLINKR 223


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 80  AKAMLFFTKGYDQSLEEVLNNA--IFDEDTDEMVVVKDIEMFSMCEHHLVPFY 130
           AK M+FF K +   +EE + +A  +  ++  EM+V + +EMF   E    PF+
Sbjct: 146 AKPMVFFQKSHGFEVEEHVKDAKYLLGDNKTEMIVPQFLEMF--IERATAPFF 196


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 67  PERAGLLKTPERAAKAML-FFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHH 125
           P R  +++TP  +A+    F ++     L++ L+  I DED D  V V   +     +  
Sbjct: 47  PRRKIVVETPSDSAQQQPPFKSRSQQNGLDDELDGIIIDEDEDRTVDVSFSQKQDTRKLK 106

Query: 126 LVPFYGKVS---IGYLPQGK 142
             PF G+ S   +G +P+ K
Sbjct: 107 SRPFLGEKSSFKLGEIPKPK 126


>Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 68  ERAGLLKTPERAAKAMLFFTK--GYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHH 125
           +R+  + T ER  + ++F  K    DQS EE L  A+     +  + +  ++  S   +H
Sbjct: 172 QRSVQMATGERIEEHVIFLVKTLNTDQSNEEALGTAVVQHSNNYKIRLTHMDFISTFPYH 231

Query: 126 LV 127
           +V
Sbjct: 232 MV 233


>AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 68  ERAGLLKTPERAAKAMLFFTK--GYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHH 125
           +R+  + T ER  + ++F  K    DQS EE L  A+     +  + +  ++  S   +H
Sbjct: 172 QRSVQMATGERIEEHVIFLVKTLNTDQSNEEALGTAVVQHSNNYKIRLTHMDFISTFPYH 231

Query: 126 LV 127
           +V
Sbjct: 232 MV 233


>AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 68  ERAGLLKTPERAAKAMLFFTK--GYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHH 125
           +R+  + T ER  + ++F  K    DQS EE L  A+     +  + +  ++  S   +H
Sbjct: 172 QRSVQMATGERIEEHVIFLVKTLNTDQSNEEALGTAVVQHSNNYKIRLTHMDFISTFPYH 231

Query: 126 LV 127
           +V
Sbjct: 232 MV 233


>U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical
           protein ZK177.2 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 108 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIF 156
           DE+++ + I   S   H+ +P++G + I  LP  K++  S+    + IF
Sbjct: 98  DELLITQKIGKLSKSCHNFLPYHGSIVISDLP-AKMMRNSECVNHLAIF 145


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,552,018
Number of Sequences: 27539
Number of extensions: 216535
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 12,573,161
effective HSP length: 79
effective length of query: 153
effective length of database: 10,397,580
effective search space: 1590829740
effective search space used: 1590829740
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)