GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001234-TA|BGIBMGA001234-PA|undefined
         (246 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    25   0.71 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.71 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   1.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   1.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   3.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.8  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 83  VRSQCYRVNATAPDFPPPYNPGTDDPGSGTHAAYPP 118
           VR      ++T+P   PP+NP    P S     Y P
Sbjct: 5   VRQVKQEADSTSPLLTPPHNPAYSPPPSYCDPWYNP 40


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 116 YPPLTSVGHDEELSRPFIKP--AWPNPLQELRESDNRQSSTVFNPPAYEQSEPP 167
           YP +T+       +R  +K   A P P+Q  + +       V+NPP + Q   P
Sbjct: 243 YPAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATP 296


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 173 EQADKEPDRISLHDEDTVESPWT 195
           +QA K+P+ +   DE   E P T
Sbjct: 71  QQAGKKPENVKKEDESDEEKPTT 93


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 128 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 169
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 137  WPNPLQ-ELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQ 174
            WP   + E ++  ++ S++ +  P      PPS TN+ Q
Sbjct: 1146 WPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQ 1184



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 84   RSQCYRVNATAPDFPPPYNPGTDDPGSGTHAAYPPLTS 121
            R  C +        PP    G D   S T   +P  T+
Sbjct: 1000 REDCTKPPEPVTPAPPQVTTGVDTGASSTEHMHPDWTT 1037


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 128 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 169
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 128 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 169
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 109 GSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPA 160
           G+ T    PP +S+ +   ++     P  P PL +   S  +QS    +P A
Sbjct: 66  GASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPAS--QQSLDASDPDA 115


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 211 DLMSRSREPSAEPGRAHP 228
           DLM ++R   A  GR HP
Sbjct: 750 DLMKKNRNLGAACGRIHP 767


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 211 DLMSRSREPSAEPGRAHP 228
           DLM ++R   A  GR HP
Sbjct: 750 DLMKKNRNLGAACGRIHP 767


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 211 DLMSRSREPSAEPGRAHP 228
           DLM ++R   A  GR HP
Sbjct: 750 DLMKKNRNLGAACGRIHP 767


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 211 DLMSRSREPSAEPGRAHP 228
           DLM ++R   A  GR HP
Sbjct: 750 DLMKKNRNLGAACGRIHP 767


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 109 GSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPA 160
           G+ T    PP +S+ +   ++     P  P PL +   S  +QS    +P A
Sbjct: 222 GASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPAS--QQSLDASDPDA 271


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 135 PAWPNPLQELRESDNRQSSTVFNPP 159
           P WP     L  S + Q+S    PP
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPP 103


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.128    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,584
Number of Sequences: 317
Number of extensions: 2603
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 246
length of database: 114,650
effective HSP length: 55
effective length of query: 191
effective length of database: 97,215
effective search space: 18568065
effective search space used: 18568065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)