Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001234-TA|BGIBMGA001234-PA|undefined
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.63
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.83
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 27 1.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 2.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 4.4
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 4.4
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 26 5.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.8
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 26 5.8
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.7
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 25 7.7
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 25 7.7
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 7.7
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.63
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 92 ATAPDFPPPYNPGTDDPGSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQ 151
A +P+ PP Y P DP PP T S+ P P R +N
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPP-PPPTLPPQSTNTSQ------LPMP---SRNVNNLG 267
Query: 152 SSTVFNPPAYEQSEPPSDTNNEQADKEPDRISL-HDEDTVESPWTPN 197
S PP S+PP N S+ H D+ SP +P+
Sbjct: 268 SQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPS 314
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 141 LQELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRISLHDEDT 189
+ ++E++NR++ N A+E S+ +DTN+ + + EDT
Sbjct: 420 VNSIKETENREALGSINEQAFEDSKDLNDTNSITGSSPTEESNALVEDT 468
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 104 GTDDPGSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPP 159
G D +G H+ P ++ H L++ F + P ++ + D+ QSS + PP
Sbjct: 257 GIDYETTGQHSVNSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNFPP 312
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 152 SSTVFNPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESPWTPN--TSSAXXXXXXXX 209
SST+ + P+ EQS P T E + E T+ + + T +
Sbjct: 193 SSTILSSPSVEQSTPSIITQTESSTTTEGSSVASSESTIANSDQSSFITYESTQNPTANK 252
Query: 210 TDLMSRSREPSAEPGRAHPQIT 231
TD +S E ++ A+ IT
Sbjct: 253 TDASQQSTESTSSSASAYSYIT 274
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 149 NRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRISLHD 186
NR ST +PP P + +N + A+KEP++ S D
Sbjct: 59 NRSKSTAASPPYVI---PSTSSNADDANKEPEKQSTSD 93
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 167 PSDTNNEQADKEPDRISLHDE-DTVESPWTPNTSSA 201
P D +NE AD+E + +SLH D +++P + + A
Sbjct: 190 PKDASNETADQEKE-LSLHTSIDEIQNPVRKSVAKA 224
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 78 RTSASVRSQCYRVNATAPDFPPPYNPG 104
RTS +R T P PPP +PG
Sbjct: 49 RTSTDTTHSRHRYPETPPSLPPPPSPG 75
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 96 DFPPPYNPGTDDPGSGTHAAYPPLT-SVGHDEELSRP 131
+ PPPY+P + + A P T +V H+ S P
Sbjct: 109 EVPPPYSPAATASNTPQNEASPAATEAVNHERPASPP 145
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 117 PPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPP 167
P L +G + P PA P P ELR + PP+ S PP
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPS-PASAPP 159
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 120 TSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAY 161
T+VG D+ +S PA QE+ S + S TV NP Y
Sbjct: 50 TNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKY 91
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 121 SVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSDTNN 172
SV L + P+ NP+ +R + N S T NP E + SDT +
Sbjct: 163 SVNESATLLQSMYVPSQANPIDAVRLASNEASGTNNNPKEIEMN---SDTTS 211
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 18 LVLDHDADISGECVRPDDREESAVLPPY 45
L DH+ D+ + D EE + LPPY
Sbjct: 18 LKTDHEIDLEKGPLPEYDSEEESTLPPY 45
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 69 DMFKVLASARTSASVRSQCYRVNATAPDFPPPYNP 103
DMF++L ART A ++S + A + PY P
Sbjct: 146 DMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYP 180
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 141 LQELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEPD 180
++ L+ + S T FN A E+ + P+ T+NE+ D D
Sbjct: 20 IEGLQPVSAKPSETAFNSDASEKEQSPT-TSNEEEDAISD 58
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,739
Number of Sequences: 5004
Number of extensions: 46941
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 14
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)
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