Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001234-TA|BGIBMGA001234-PA|undefined
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 33 0.21
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 33 0.28
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 31 0.65
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 30 2.0
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 30 2.0
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 30 2.0
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 30 2.0
06_01_1021 + 7990313-7990535,7990634-7990708,7991885-7991952 30 2.0
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 29 2.6
12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934 29 3.5
09_02_0131 - 4693828-4694019,4694107-4694199,4694294-4694375,469... 29 3.5
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 29 3.5
01_06_0146 + 26969011-26969995,26970878-26970930 29 4.6
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 28 8.1
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 8.1
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 28 8.1
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 28 8.1
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 28 8.1
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 98 PPPYNPGTDDPGSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTV-F 156
PP P + P + P S EE S P P +P E ES+ S T
Sbjct: 916 PPTPTPKSSPPSHEEYVPPSPAKSTPPPEEKSPPSHTPESSSPPSE--ESEPPPSPTPKS 973
Query: 157 NPPAYEQSEPPSDTNNEQADKEP 179
+PP++E+ PPS + ++P
Sbjct: 974 SPPSHEEYVPPSPAKSTPPPEKP 996
Score = 28.3 bits (60), Expect = 6.1
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 12/137 (8%)
Query: 95 PDFPPPYNPGTDDPGSGTHAAYP---PLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQ 151
P PPP P + P P GH+ P +K + P P + +
Sbjct: 796 PTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSP-VKSSSPPPEAHVSSPPPEK 854
Query: 152 SST------VFNPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESPWTPNTSSAXXXX 205
SS+ V +PP E+S PP +T + P+ IS E TP +SS
Sbjct: 855 SSSPPPEAHVSSPPPPEKSPPPPETKSPPT-LTPE-ISPPPEGKSPPSHTPESSSPPSKE 912
Query: 206 XXXXTDLMSRSREPSAE 222
+S PS E
Sbjct: 913 SEPPPTPTPKSSPPSHE 929
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 87 CYRVNATAPDFPPPYNPGTDDPGSGTHAAYPPLT---SVGHDEELSRPFIKPA------W 137
CY V++ AP PPP T P S A PP T S ++ RP P W
Sbjct: 45 CYPVSSAAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSPPPVAEPYYW 104
Query: 138 PNP 140
P P
Sbjct: 105 PKP 107
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 99 PPYNPGTDDPGSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQE-----LRESDNRQSS 153
PPY +DP G A PP D RP I P + P + L R
Sbjct: 500 PPYGGPPNDPPYGRPAIDPPYGRPAIDPPYGRPAIDPPYRRPANDTSYGGLNNDGPRDPY 559
Query: 154 TVFNPPAYEQSEPPSDTNNEQADKEPDR 181
T + + + E PS + DR
Sbjct: 560 TAYPVEYFSKREYPSGNSKVTPSASYDR 587
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 29.9 bits (64), Expect = 2.0
Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 68 RDMFKVLASARTSASVRSQCYRVNATAPDFP-PPYNPGTDDPGSGTHAAYPPLTSVGHDE 126
RD+ A +S S + ATAP P PP P P S PP
Sbjct: 541 RDIILSAAVLAAGSSTPSSSQAMTATAPAPPSPPEPPSPQHPPSPPPLRSPPRQPTPPPS 600
Query: 127 ELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEP-PSDTNNEQADKEPDRISLH 185
+P + P P+Q S +Q + PP+ + S P P EQ S
Sbjct: 601 PSQQPPLPT--PQPVQASPTSPTKQHAPP-APPSVQTSPPTPQSALVEQVHIPDGTTSEP 657
Query: 186 DEDTVE 191
+T+E
Sbjct: 658 KSNTLE 663
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 142 QELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEP 179
QE ES Q + + + EQ P+D NN+Q+D +P
Sbjct: 177 QEPEESTVEQLEDIHDNNSSEQPPAPADMNNQQSDFQP 214
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 156 FNPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESPWTPNTSS 200
F+ +S+ + +++E +D + D+ S HDED SP++ + S
Sbjct: 333 FDDKRDNESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDS 377
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 94 APDFPPPYNPGTDDPGSGTHAAYPP 118
AP PPP PGT S H AYPP
Sbjct: 18 APPPPPPPPPGTSLYASYRHHAYPP 42
>06_01_1021 + 7990313-7990535,7990634-7990708,7991885-7991952
Length = 121
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 80 SASVRSQCYRVNATAPD-FPPPYNPGTDDPGSGTHAAY 116
+ SV+ Q RV A +P FP P PG PG G H Y
Sbjct: 45 ATSVKVQA-RVLALSPSGFPKPPGPGLPCPGGGYHGIY 81
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 74 LASARTSASVRSQCYRVNATAPDFPPPYNPGTDDP 108
+A+A T ++ + + V A APD P ++P DP
Sbjct: 21 VAAASTPPALHKRSHAVAAAAPDSPDAFSPSPPDP 55
>12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934
Length = 386
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/84 (23%), Positives = 31/84 (36%)
Query: 157 NPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESPWTPNTSSAXXXXXXXXTDLMSRS 216
N + +Q P D NN+Q+D +P + + N A + +
Sbjct: 194 NNSSSQQPPAPPDMNNQQSDFQPMTAMSMSKSCSLTDLLNNLDCAALSQFLLDGSSDAIA 253
Query: 217 REPSAEPGRAHPQITLNLQCNNNM 240
P+ +P TLN NNNM
Sbjct: 254 ELPAPPSPLIYPNQTLNYNINNNM 277
>09_02_0131 -
4693828-4694019,4694107-4694199,4694294-4694375,
4694465-4694575,4694656-4694907,4694993-4697196
Length = 977
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 68 RDMFKVLASARTSASVRSQCYRVNATAPDFP-PPYNPGTDDPGSGTHAAYPPLTSVGHDE 126
RD+F A +S S + A AP P PP P P S PP
Sbjct: 454 RDIFLSAAVLAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPS 513
Query: 127 ELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEP 166
+P + P P+Q S +Q + PP+ + S P
Sbjct: 514 PSQQPPLPT--PQPVQASPTSPTKQHAPP-APPSVQTSPP 550
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 147 SDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESP 193
SDN +P SE + +N QADK PD + E E P
Sbjct: 190 SDNMDEEISVDPSQGNNSEAVNTSNINQADKAPDLPEIMREAPFEGP 236
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 91 NATAPDFPPPYNPGTDDPG----SGTHAAYPPLTS-----VGHDEELSRPFIKPAWPNPL 141
+A AP P P + G DP S A PP T+ + HD +P P P P
Sbjct: 52 SAAAPTTPSPNHSG--DPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRAAPP-PAPA 108
Query: 142 QELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRISL 184
+ + S +PPA E + +AD EP+ ++L
Sbjct: 109 PDQPAPPSPPPSLPPSPPAPGSPESMLEREASEADGEPENMTL 151
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 125 DEELSRPFIKPAWPNPLQELRESD--NRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRI 182
D+E R + +E RES N S+T P A +S P+D + PDR
Sbjct: 808 DQERDRDRERDRERESRREARESSGANNDSTTSMRPKARSRSSQPADRSAPPPPASPDRH 867
Query: 183 S 183
S
Sbjct: 868 S 868
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 95 PDFPPPY-----NPGTDDPGSGTHAAYPPLTSVGHDE--ELSRPFIKPAWPNPLQELRES 147
P PPP NPG G G H PP G+ + P P +
Sbjct: 313 PPPPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPYQAGNPVFAGGAPGYQGQGGNP 372
Query: 148 DNRQSSTVFN--PPAYEQSEP 166
+Q S +N PAY++ EP
Sbjct: 373 SYQQGSDNYNAGAPAYKRDEP 393
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 97 FPPPYNPGTDDPGSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVF 156
+ P GTD P S H PP G+ S P+ +P E+ + + SS
Sbjct: 257 YSSPSYQGTDYPSSDVHK--PPH---GYS---SAPYTSTDYPT--NEVHKPPSNYSS--- 303
Query: 157 NPPAYEQSEPPSDTNNEQADKEPDRISLHDEDTVESPWT 195
PP P SD+ N Q++ +PD I + + P+T
Sbjct: 304 -PPYTRTDYPSSDSYNPQSNDKPD-IPTYPHTYHQPPYT 340
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 125 DEELSRPFIKPAWPNPLQELRESDNRQSSTV-FNPPAYEQSEPP 167
D+E++ PF++P+ EL E +N V P ++ E P
Sbjct: 19 DDEITAPFLRPSTSRGSPELEEEENSPIEQVALTVPVSDEPETP 62
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 135 PAWPNPLQELRESDNRQSSTVFNPPAYEQSEP--PSDTNNEQADKEPD 180
P P PL ++ S + +PP S P P+DT E+ ++E D
Sbjct: 74 PPPPPPLDADAAAEAAPSPALTSPPPNPSSSPLPPTDTTEEEEEEEED 121
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,867,577
Number of Sequences: 37544
Number of extensions: 329668
Number of successful extensions: 900
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 29
length of query: 246
length of database: 14,793,348
effective HSP length: 80
effective length of query: 166
effective length of database: 11,789,828
effective search space: 1957111448
effective search space used: 1957111448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
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