GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001233-TA|BGIBMGA001233-PA|IPR001993|Mitochondrial
substrate carrier
         (304 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.92 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   3.7  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   3.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   3.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 231 WTVIFPTDVIKSRVQISNKSQKFLTVGYEIVKKEGVLALYNGLK 274
           W +++P +  +  V  + + + F  +  +I+ +  +  L NGLK
Sbjct: 210 WHLVYPFEGAREIVDKNRRGEIFYYMHQQIIARFNIERLCNGLK 253


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 229 VLWTVIFPTDVIKSRVQISNKSQKFLTVGYEIVKKE---GVLALYNGLKPTLVRTIPATA 285
           V++  IF   VI+    I      F ++   +  K     +L   +GL  T+V T+  T 
Sbjct: 104 VIFGCIFALKVIEVFKNIEEVDVAFRSLAVWVPYKHLYVNILIHLSGLV-TIVATLTVTI 162

Query: 286 ALFVVYEYSKK 296
             F  Y+Y  K
Sbjct: 163 IFFASYQYGTK 173


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 229 VLWTVIFPTDVIKSRVQISNKSQKFLTVGYEIVKKE---GVLALYNGLKPTLVRTIPATA 285
           V++  IF   VI+    I      F ++   +  K     +L   +GL  T+V T+  T 
Sbjct: 104 VIFGCIFALKVIEVFKNIEEVDVAFRSLAVWVPYKHLYVNILIHLSGLV-TIVATLTVTI 162

Query: 286 ALFVVYEYSKK 296
             F  Y+Y  K
Sbjct: 163 IFFASYQYGTK 173


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 44  TFPHLYKGMYD 54
           TFPHL+ G+ D
Sbjct: 505 TFPHLFNGLVD 515


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 53  YDCLKHPLRNDGVIR 67
           YDC  +P +N GV R
Sbjct: 378 YDCDSNPCQNGGVCR 392


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,343
Number of Sequences: 317
Number of extensions: 1982
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 304
length of database: 114,650
effective HSP length: 57
effective length of query: 247
effective length of database: 96,581
effective search space: 23855507
effective search space used: 23855507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)