GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001233-TA|BGIBMGA001233-PA|IPR001993|Mitochondrial
substrate carrier
         (304 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 32/301 (10%)

Query: 17  DFTAGSLGGVAVVYVVQPLDTVKVKMQTFPHL---------YKGMYDCLKHPLRNDGVIR 67
           DF AG +        V P++ VK+ +Q   H+         YKGM DC     +  G + 
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQV-QHISKQISEEQRYKGMIDCFVRIPKEQGFL- 70

Query: 68  GLYAGTTPAIMANVAENSVLFAAYG-YCQKFVCRITGVESVEQLSA--VGNXXXXXXXXX 124
             + G    ++      ++ FA    Y Q F   + GV+   Q     VGN         
Sbjct: 71  SYWRGNLANVIRYFPTQALNFAFKDKYKQVF---LGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 125 XXXXTLCPTELIKCQLQAMREVNIQGSQTAVKVTPLQLTQQIFKQYGIQGLFRGLVPTIM 184
                + P +  + +L A  +V   G +         LT +IFK  GI GL+RG   ++ 
Sbjct: 128 TSLCFVYPLDFARTRLAA--DVGKAGGEREFTGLGNCLT-KIFKADGITGLYRGFGVSVQ 184

Query: 185 REMPXXXXXXXXXXXTRELLAKPGQSKDDIGFLRTMAAGAVGGLVLWTVIFPTDVIKSRV 244
             +             R +L  P ++     FL +     V   V   V +P D ++ R+
Sbjct: 185 GIIIYRAAYFGFYDTARGMLPDPKKTP----FLISWGIAQVVTTVAGIVSYPFDTVRRRM 240

Query: 245 QISN---KSQ----KFLTVGYEIVKKEGVLALYNGLKPTLVRTIPATAALFVVYEYSKKF 297
            + +   KS+      L     I K EG  A + G    ++R     A + V+Y+  K  
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRG-TGGALVLVLYDEIKNL 299

Query: 298 M 298
           +
Sbjct: 300 L 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 32/301 (10%)

Query: 17  DFTAGSLGGVAVVYVVQPLDTVKVKMQTFPHL---------YKGMYDCLKHPLRNDGVIR 67
           DF AG +        V P++ VK+ +Q   H+         YKGM DC     +  G + 
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQV-QHISKQISEEQRYKGMIDCFVRIPKEQGFL- 70

Query: 68  GLYAGTTPAIMANVAENSVLFAAYG-YCQKFVCRITGVESVEQLSA--VGNXXXXXXXXX 124
             + G    ++      ++ FA    Y Q F   + GV+   Q     VGN         
Sbjct: 71  SYWRGNLANVIRYFPTQALNFAFKDKYKQVF---LGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 125 XXXXTLCPTELIKCQLQAMREVNIQGSQTAVKVTPLQLTQQIFKQYGIQGLFRGLVPTIM 184
                + P +  + +L A  +V   G +         LT +IFK  GI GL+RG   ++ 
Sbjct: 128 TSLCFVYPLDFARTRLAA--DVGKAGGEREFTGLGNCLT-KIFKADGITGLYRGFGVSVQ 184

Query: 185 REMPXXXXXXXXXXXTRELLAKPGQSKDDIGFLRTMAAGAVGGLVLWTVIFPTDVIKSRV 244
             +             R +L  P ++     FL +     V   V   V +P D ++ R+
Sbjct: 185 GIIIYRAAYFGFYDTARGMLPDPKKTP----FLISWGIAQVVTTVAGIVSYPFDTVRRRM 240

Query: 245 QISN---KSQ----KFLTVGYEIVKKEGVLALYNGLKPTLVRTIPATAALFVVYEYSKKF 297
            + +   KS+      L     I K EG  A + G    ++R     A + V+Y+  K  
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRG-TGGALVLVLYDEIKNL 299

Query: 298 M 298
           +
Sbjct: 300 L 300


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 241 KSRVQISNKSQKFLTVGYEIVKKEGVLALYNGLKPTLVRTIPATAALFVVYEYSKKFMHK 300
           K  + +   +  F+   YE  K E ++ LY    P L+   P      ++ ++S KF ++
Sbjct: 47  KDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFS-KFANR 105

Query: 301 SFG 303
             G
Sbjct: 106 GLG 108


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 52 MYDCLKHPLRNDGVIRGLYAGTTPAIMANVAENSVLFAA 90
          +YD ++ P + DG    +Y   T   + ++ ENS+ +AA
Sbjct: 47 LYDKMRPP-KKDGQATVVYFHVTVMGLDSIDENSMTYAA 84


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,744
Number of Sequences: 429
Number of extensions: 2600
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 140,377
effective HSP length: 57
effective length of query: 247
effective length of database: 115,924
effective search space: 28633228
effective search space used: 28633228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)