Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001232-TA|BGIBMGA001232-PA|IPR001841|Zinc finger,
RING-type
         (126 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.001
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                36   0.010
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                33   0.053
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   32   0.12 
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)              32   0.12 
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.12 
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              31   0.22 
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                31   0.22 
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.50 
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               30   0.66 
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              30   0.66 
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)                  30   0.66 
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   28   2.0  
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             27   3.5  
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)                    27   4.6  
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)                     27   4.6  
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)             26   8.1  

>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 21 KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM 55
          K  +K F +KKWNA+A+W+WD+  D CAICR  +M
Sbjct: 25 KESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 80  CNHAFHFHCISRWLKTRQVCPLDNR 104
           C H FH  CI  WL T+ +CP+D +
Sbjct: 230 CRHVFHRDCIDSWLATQSICPVDGQ 254


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 47  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 105
           C      I D+C+ C    A   S    + +  C H FH  CI  WL  T   CPLD  E
Sbjct: 246 CVTVNEGIDDVCLICMEEYAVGDS----MKYLPCRHNFHSACIRTWLTYTSCKCPLDGLE 301


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 47  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 100
           C++ R   M  C EC           CT+    C H+FH HCI  WL      P
Sbjct: 546 CSVGRPSWMIPCGECVIC-LDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAP 598


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 80  CNHAFHFHCISRWLKTRQVCPL 101
           C+H+F  +C+  WL+ R  CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407


>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
          Length = 545

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 80  CNHAFHFHCISRWLK 94
           CNH FH  CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 80  CNHAFHFHCISRWL-KTRQVCPLDNREWEFQKQ 111
           C+HA+H  C+  WL + ++ CP+  R  E  K+
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPVCKRPVETSKK 351


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 80  CNHAFHFHCISRWLKTRQVCPL 101
           C H FH  C+  WL +   CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 79  VCNHAFHFHCISRWLKTRQVCPL 101
           VC H +   C+SRWL+    CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301


>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 80  CNHAFHFHCISRWLKTRQVCPLDNRE 105
           C+H FH  CI  WL+    CP+   E
Sbjct: 80  CDHLFHPGCILPWLEKTNSCPVCRHE 105


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 80  CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 109
           C H +H  CI +WLK R     D  +W+ +
Sbjct: 311 CLHEYHTRCIDKWLKNR-----DQSQWKLE 335


>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 45  DNCAICRNHIMD-----LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 99
           ++C IC+  + +      C  C             +    C H F   CIS W    Q C
Sbjct: 459 NSCPICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFCEDCISLWFDREQTC 518

Query: 100 PL 101
           P+
Sbjct: 519 PM 520


>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
          Length = 203

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 60  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 100
           EC     +  S+  +++   C H+F   C S+W++  + CP
Sbjct: 61  ECYDVNVTLMSDSFSISLQPCMHSFCASCYSQWMEHSRDCP 101


>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 79  VCNHAFHFHCISRWLKT---RQVCPL 101
           +C H F + C+ RWL+T   R +CP+
Sbjct: 77  MCGHLFCWPCLHRWLETRPNRSMCPV 102


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 45  DNCAIC-RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 88
           D+   C R+H   L   C A      +E+CT A   C H  HF C
Sbjct: 126 DSKVYCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCC 170


>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 98  VCPLDNREWEFQKQVHFIKIYYHIFRI 124
           +  +D RE+E + + HF++ Y++I RI
Sbjct: 397 IMKIDGREFEKKVREHFVRPYFYIKRI 423


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 21  KGDKKRFEVKKWNAVALW-AWDIVVDNCAICRNHIMDLCIECQANQASATSE 71
           K  K  FE KK NA AL    ++ V    I RN   ++C  C+A + S+  E
Sbjct: 162 KEGKLHFEAKKRNAPALPPVRELKVLKDNISRNSSSEICPSCRALETSSLIE 213


>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
          Length = 682

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 46  NCAICRNHIMDLCIECQANQASATS 70
           NC+I RN   ++C  C+A + S +S
Sbjct: 89  NCSISRNSSSEICPSCRALETSLSS 113


>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
          Length = 277

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 80  CNHAFHFHCISRWLKT 95
           C H FH+ C+ +++KT
Sbjct: 254 CAHVFHYGCLDKYMKT 269


>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 80  CNHAFHFHCISRWLKTRQVCPLDNREWE 107
           C H F   CI  W K      ++  EWE
Sbjct: 120 CMHVFCLECILEWSKIPVEKVIEEEEWE 147


>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 80  CNHAFHFHCISRWLKTRQVCPL 101
           C H F   C+  W+     CPL
Sbjct: 72  CGHVFCSQCLVHWIAENGTCPL 93


>SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)
          Length = 328

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 91  RWLKTRQVCPLDNR--EWEFQKQVHFIKIYYHIFR 123
           R  + ++  P  NR  +WE ++Q+HF K  Y+I +
Sbjct: 152 RLKRPKREMPTTNRSGKWEKRRQMHFWKELYYIIK 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.330    0.138    0.507 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,152,518
Number of Sequences: 59808
Number of extensions: 151834
Number of successful extensions: 441
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 23
length of query: 126
length of database: 16,821,457
effective HSP length: 74
effective length of query: 52
effective length of database: 12,395,665
effective search space: 644574580
effective search space used: 644574580
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)