Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001232-TA|BGIBMGA001232-PA|IPR001841|Zinc finger,
RING-type
(126 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 186 1e-48
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 66 2e-12
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 1e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 38 4e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.002
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.004
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.004
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.014
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 33 0.018
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.055
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.13
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.13
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.17
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.22
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.22
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.29
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 0.39
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 0.39
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 0.89
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.2
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 1.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 3.6
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 4.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 4.8
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 6.3
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 186 bits (452), Expect = 1e-48
Identities = 75/88 (85%), Positives = 79/88 (89%)
Query: 26 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 85
RFE+KKWNAVALW WDIVVDNCAICRNHIMDLCIECQAN SA ++ECTVAWG CNHAFH
Sbjct: 20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFH 79
Query: 86 FHCISRWLKTRQVCPLDNREWEFQKQVH 113
FHCISRWL TR VCPLDNREWEFQ+ H
Sbjct: 80 FHCISRWLNTRNVCPLDNREWEFQRYGH 107
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 66.1 bits (154), Expect = 2e-12
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 26 RFEVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 84
+ ++ +++A+A W WD D+ C ICR C +C ++ + C + WG C H F
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56
Query: 85 HFHCISRWLKT---RQVCPLDNR 104
H HCI WL T + CP+D +
Sbjct: 57 HAHCIQNWLATSGSQGQCPMDRQ 79
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.9 bits (89), Expect = 1e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 80 CNHAFHFHCISRWLKTRQVCPLDNR 104
C H HFHC+ WL+ +Q CP+ R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 38.3 bits (85), Expect = 4e-04
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 67 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKQVHFIK 116
S+T + +A C H FH HC+ W + CPL E+ + F+K
Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFVK 92
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.002
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 80 CNHAFHFHCISRWLKTRQVCPL 101
C+H +H C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 58 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 101
C+ C +N ++EC CNH FH CI +WL + Q CPL
Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 56 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREW 106
D CI C A+ A + + C H FH CI W+ T + CPL N ++
Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 33.1 bits (72), Expect = 0.014
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 59 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNRE 105
+EC S T + VA C H FH CI++W+ R CP N E
Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 32.7 bits (71), Expect = 0.018
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 49 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 105
+ + +MDL C C + ++ T C H F +C+ +WL+ CPL +E
Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPLCRKE 152
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 31.1 bits (67), Expect = 0.055
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 78 GVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 108
G C H FH C+ +W K+ CPL + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.13
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 69 TSEECTVAW--GVCNHAFHFHCISRWLK 94
T T W G C H FH CI +W K
Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.13
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 80 CNHAFHFHCISRWLKT-RQVCPL 101
C H FH CI +WL T CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.17
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 80 CNHAFHFHCISRWLKTRQVCPL 101
C H FH +CI WL+ C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.22
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 80 CNHAFHFHCISRWLKTRQVCP 100
C H + + C+ WLK + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.22
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 80 CNHAFHFHCISRWLKTRQVCPLDNREWE 107
C H H S W T +CP+ N + E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.29
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 58 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 92
C+ C S+ + T+ VC H FH C+ +W
Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.3 bits (60), Expect = 0.39
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 79 VCNHAFHFHCISRWLKTRQ-VCPLDNR 104
+C H F + CI + ++TRQ CP+ R
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 0.39
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 80 CNHAFHFHCISRWLKTRQVCPL 101
C H F + CI+ W + CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 0.89
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 80 CNH-AFHFHCISRWLKTRQVCPLDNR 104
C H F + CI RW+ CP+ R
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKR 62
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 1.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 80 CNHAFHFHCISRWLKTRQVCPL 101
C H + C+ WLK CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 80 CNHAFHFHCISRW-LKTRQVCPL 101
C+H FH CI + LK +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 22 GDKKRFEVKKWNAVA 36
G+ RFEVK WN VA
Sbjct: 1538 GNAYRFEVKDWNLVA 1552
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 4.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 80 CNHAFHFHCISRWLKTRQVCP 100
C+H F CI +L+ +CP
Sbjct: 44 CSHTFCSFCIRDYLREHPMCP 64
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 4.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 80 CNHAFHFHCISRWLKTRQVCP 100
C+H H C +++T CP
Sbjct: 290 CSHPLHQRCHEEYIRTNYRCP 310
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 6.3
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 45 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 88
D+ C + IEC QAS +S TV C F F C
Sbjct: 212 DHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCN-CGKQFCFGC 254
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.330 0.138 0.507
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,574
Number of Sequences: 5004
Number of extensions: 18684
Number of successful extensions: 83
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 26
length of query: 126
length of database: 2,362,478
effective HSP length: 65
effective length of query: 61
effective length of database: 2,037,218
effective search space: 124270298
effective search space used: 124270298
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 49 (23.8 bits)
- SilkBase 1999-2023 -