GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001232-TA|BGIBMGA001232-PA|IPR001841|Zinc finger,
RING-type
         (126 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    29   0.064
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    22   7.4  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    22   7.4  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    22   7.4  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    22   7.4  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    21   9.7  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    21   9.7  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
          gambiae T1 retroposon. ).
          Length = 442

 Score = 28.7 bits (61), Expect = 0.064
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 48 AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 88
          ++C    +  C  C A   SA S  C    GVC    H HC
Sbjct: 27 SVCAVSFVMQCSTCNAPTDSANSVSCA---GVCGSKHHTHC 64


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
          doublesex protein protein.
          Length = 265

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 46 NCAICRNH 53
          NCA CRNH
Sbjct: 40 NCARCRNH 47


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
          doublesex protein protein.
          Length = 622

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 46 NCAICRNH 53
          NCA CRNH
Sbjct: 40 NCARCRNH 47


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
          doublesex protein protein.
          Length = 241

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 46 NCAICRNH 53
          NCA CRNH
Sbjct: 40 NCARCRNH 47


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
          doublesex protein protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 46 NCAICRNH 53
          NCA CRNH
Sbjct: 40 NCARCRNH 47


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 99  CPLDNREWEFQKQVHFIKI 117
           CP D R+W+   Q++ + I
Sbjct: 463 CPTDPRDWQQVLQIYPVGI 481


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 58  CIECQANQASATSEEC 73
           CI+C AN+     E C
Sbjct: 367 CIDCGANRDGPNCERC 382


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.330    0.138    0.507 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,377
Number of Sequences: 2123
Number of extensions: 4927
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 126
length of database: 516,269
effective HSP length: 57
effective length of query: 69
effective length of database: 395,258
effective search space: 27272802
effective search space used: 27272802
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 43 (21.4 bits)