Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001231-TA|BGIBMGA001231-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR004878|Protein of unknown
function DUF270
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    31   0.30 
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    30   0.92 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.6  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   4.9  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    27   6.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   8.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   8.6  

>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 213 DQPILFRYANISGHKQIDINDKLDNLTIEEIVDYPKPLLSVFNNNRTDIGSKPSKKSKAF 272
           D+ I     N++    I  +   DNL I+ I    KP  S   NN+++   KPSK++K  
Sbjct: 209 DENITALQKNVANFTSIKDSGGRDNLYIQTI---SKPRRSYVQNNKSEQTIKPSKQNKQK 265

Query: 273 KEIKQCCARVKSNN 286
           +E K      K N+
Sbjct: 266 EEKKTISQGNKPNS 279


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 312 SLMLFNGLFQKKQHVELALLQINIWETILFVLMTIASAACIQRMRALPLRK-AVSSLQLE 370
           +L+L NGL  + + VE + +Q N       + + ++SA  ++++RA+P +  A + L L 
Sbjct: 223 ALLLSNGLSVQPKSVEESQIQFNELAQKFGIPLELSSAEKLEKLRAIPFQDLADNILNLR 282

Query: 371 -HALLLVTQCGVYLYYLFQIIGTGFLLKRYSEGSR 404
            H    VT         F+ I  G   KR  +  R
Sbjct: 283 LHTFRAVTDGDFVNPNTFKDIYDGTFGKRIRDSGR 317


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 76   LYVISMLFLAYTFYHLRMARRYKDDNVKRTRYGSFYLHIGVAGFGVGSIIYSCLQFGEYF 135
            LY++ +LFL   FY   +A  Y  +++       + ++I V  +G+ S  Y    F   F
Sbjct: 1277 LYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGL-SFYYFFHSFWNMF 1335

Query: 136  DL-----SGDCQLTIVA-----VKPVLRILYLVAQTVFIFSYTDVLDPM-RGVVIDRFGL 184
            D+     S  C + I+A        +L+   LV  TV +    D  D + + VV     +
Sbjct: 1336 DVVVTLGSLTCNIAILAKFENRSLTLLQTTLLVLVTVHLIPKFDNFDQLSKTVVASLPSI 1395

Query: 185  MHLIATNVCEWLNVVV 200
              LIAT +  ++   +
Sbjct: 1396 FSLIATWIVLYITFAI 1411


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 228 QIDINDKLDNLTIEEIVDYPKP---LLSVFNNNRTDIGSKPSKKSKAFK--EIKQCCARV 282
           Q++I++K+D +  + IV Y +P   L   F+ N     S  +K+    +   +   C ++
Sbjct: 244 QVNIDNKVDEILKDNIVSYHQPSGTLSLCFSKNELKKHSNLTKEELLLRCLTLTTSCRQI 303

Query: 283 KSNNHFSVDCGSAHKGLFMGIA 304
           K ++  S+ C S   G  + IA
Sbjct: 304 KRSSVVSL-CNSVFDGKKLTIA 324


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 178 VIDRF----GLMHLIATNVCEWLNVVVQDTRDDIVDV 210
           ++DR+    GL++  A N+ E L    +D RDD+V V
Sbjct: 188 IVDRWPLQQGLINAFAENIEETLKTYPEDVRDDVVIV 224


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 241 EEIVDYPKPLLSVFNNNRTDIGSKPSKKSKAFKEIKQCCARVKSNNHFSVD 291
           EE++   K   S+F+NN   +  K SKK K    +   C +V   +H+  D
Sbjct: 551 EELLKKRKLFSSLFSNN---VSYKKSKKLKRTHTVHDKCQKVAKLDHYIRD 598


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 504 LYEVWKNSYKRKNIGEYNDTNEF 526
           L E+WK+   R+N+   ++TN F
Sbjct: 239 LAEIWKSEASRRNLTSSDETNSF 261


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,451
Number of Sequences: 5004
Number of extensions: 100879
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 7
length of query: 533
length of database: 2,362,478
effective HSP length: 76
effective length of query: 457
effective length of database: 1,982,174
effective search space: 905853518
effective search space used: 905853518
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)