Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001231-TA|BGIBMGA001231-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR004878|Protein of unknown
function DUF270
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0938 - 7229953-7230882 34 0.33
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157... 33 0.57
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159... 30 4.0
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 30 5.3
07_01_0749 + 5769089-5769559 29 7.0
05_07_0282 + 28934359-28936458 29 9.3
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 29 9.3
>06_01_0938 - 7229953-7230882
Length = 309
Score = 33.9 bits (74), Expect = 0.33
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 305 VLAGTIVSLMLFNGLFQKKQHVELALLQINIWETILFVLMTIASAACIQRMRALPLRKAV 364
+LAG + +L L + LF + H+ L L T LF+L +A A ++ LPL V
Sbjct: 53 LLAGIVSALFLLSALFSARHHLSLPTLAA----TALFLLYALAPLAPLRAPLPLPLLDLV 108
Query: 365 SSLQLEHALLL 375
+ LLL
Sbjct: 109 LAAAFAQELLL 119
>06_03_0714 -
23814826-23814997,23815080-23815164,23815680-23815791,
23817203-23817304,23817375-23817447,23817918-23817997,
23818076-23818267,23818945-23819064,23819157-23819244,
23819319-23819353,23819447-23819518,23819860-23819931,
23820054-23821189,23822011-23822362
Length = 896
Score = 33.1 bits (72), Expect = 0.57
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 229 IDINDKLDNLTIEEIVDYPKPLLSVFNNNRTDIGSKPSKKSKAFKEIKQCCARVKSNNHF 288
+D+N+K +T E+I++ PK ++ F + I S SK+ + F I + V S +
Sbjct: 313 VDVNEK-SQVTSEDILNTPKAVVQTFQIPQGSISSLRSKRRQLFSPITHSASNVVSQDAS 371
Query: 289 SV 290
S+
Sbjct: 372 SL 373
>09_04_0703 -
19614057-19614264,19615305-19615407,19615880-19615973,
19616216-19616229,19616384-19616595,19617653-19617940,
19618275-19618362,19618444-19618515,19618597-19618672,
19618755-19618813,19618953-19619016,19619253-19619402
Length = 475
Score = 30.3 bits (65), Expect = 4.0
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 462 VKNGRAEFHPLQMEFYGVWAWTLITHVSAPLLVCYRFQATVCLYEVWKNSYKRKNIGEYN 521
+ +GR E +P +E+Y LI H P + Y F L + + + I +Y+
Sbjct: 115 IPDGRGEINPKGLEYYNNLIDELIMHGIQPHVTIYHFDLPQALQDEYGGILSPRFIEDYS 174
Query: 522 DTNEFELKN 530
E KN
Sbjct: 175 AYAEVCFKN 183
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 29.9 bits (64), Expect = 5.3
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 189 ATNVCEWLNVVVQDTRDDIVDVAYDQPILFRYANISGHKQIDINDKLDNLTIEEIVDYPK 248
A N WLN++ Q+T +++ + Q LF + ++++ D + +++ D
Sbjct: 504 ADNELSWLNILSQETGENVQERINLQKALFELEETNKRNRMELQHLDDAIARQQVKDKDS 563
Query: 249 PLLSVFNNNR 258
+L + R
Sbjct: 564 AVLQALTSRR 573
>07_01_0749 + 5769089-5769559
Length = 156
Score = 29.5 bits (63), Expect = 7.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 339 ILFVLMTIASAACIQRMRALPLRKAVSSLQLEHALLLVTQ----CGVYLYYLFQIIGTGF 394
I+FV +A AC R PL ++ QL+ LLL Q C ++ + I+ T F
Sbjct: 3 IIFVFALLAIVACNASARFDPLSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQYSIVATPF 62
>05_07_0282 + 28934359-28936458
Length = 699
Score = 29.1 bits (62), Expect = 9.3
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 74 MYLYVISMLFLAYTFYHLRMARRYKDD----NV-KRTRYGSFYLHIGVAGFGVGS 123
+ + V +ML +A HL + Y + NV + R+G YLH+ VAGF GS
Sbjct: 334 LVVVVDTMLQIACGMAHLHSNKMYHGNLNPSNVIVKPRHGDAYLHVKVAGFVSGS 388
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 29.1 bits (62), Expect = 9.3
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 180 DRFGLMHLIATNVCEWLNVVVQDTRDDIVDVAYDQPILFRYAN--ISGHKQIDINDKLDN 237
D F ++ + L V+ DDI+D A +Q + + N G+K ++ +
Sbjct: 428 DNFLGKYIYKDTLARNLAAVIYKDEDDIIDTAKEQYRVLKTDNEFRYGYKVVENGNLRSA 487
Query: 238 LTIEEIVDYPK--PLLSVFNNNRTDIGSKPSKKSKAFKEI 275
LT +++ PK L +V + + G S ++F +I
Sbjct: 488 LTTSNVIELPKKEELKTVVDKVKDFFGDVTSGAKESFAQI 527
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,548
Number of Sequences: 37544
Number of extensions: 582032
Number of successful extensions: 1503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 7
length of query: 533
length of database: 14,793,348
effective HSP length: 85
effective length of query: 448
effective length of database: 11,602,108
effective search space: 5197744384
effective search space used: 5197744384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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