Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001231-TA|BGIBMGA001231-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR004878|Protein of unknown
function DUF270
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21120.1 68415.m02506 expressed protein                             30   3.3  
At2g24540.1 68415.m02931 kelch repeat-containing F-box family pr...    30   4.4  
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    29   5.8  

>At2g21120.1 68415.m02506 expressed protein 
          Length = 328

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 287 HFSVDCGSAHKGLFMGIAVLAGTIVSLMLFNGLFQKKQHVELALLQINIWETILFVLMTI 346
           HF   CG  +  +++GI  L G +  + +       K  +E  + QI   +T LFV++ +
Sbjct: 162 HFEPLCGQTNILVYIGICSLMGALTVMSIKAIGIAIKLTME-GVSQIGYPQTWLFVMVAV 220

Query: 347 ASAACIQRMRALPLRKAVSSLQLEHALLLVTQCGVYLYYLFQIIGTGFLLKRYSEGSRAT 406
               C+   + + L KA+ +        +V+     ++    I+ +  + K +S G  A 
Sbjct: 221 ---TCVV-TQLIYLNKALDTFN----AAIVSPVYYVMFTTLTIVASAIMFKDWS-GQDAA 271

Query: 407 RIISPLCAVIQSSCQTLLV 425
            + S LC  I     T+++
Sbjct: 272 SVASELCGFITVLTGTMIL 290


>At2g24540.1 68415.m02931 kelch repeat-containing F-box family
          protein similar to SKP1 interacting partner 4
          [Arabidopsis thaliana] GI:10716953; contains Pfam
          profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 372

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 2  TKNKEKSNQSASREWRERSEPLLA-VPEDESESMTVALSAFYAKLLIVLGIALPVTSTIQ 60
          T N    N  A  E R +S+PL++ +P D +E   + L   Y  L   +  +   T T  
Sbjct: 7  TSNINTINDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNP 66

Query: 61 NELYTNITSDIFTMYLYVIS 80
            L++  +  I + YL+V +
Sbjct: 67 RFLFSKQSLSISSPYLFVFA 86


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 462 VKNGRAEFHPLQMEFYGVWAWTLITHVSAPLLVCYRFQATVCL---YEVWKNSYKRKNIG 518
           + NGR   +P  ++FY  +   L+ H   P +  + +     L   Y  W N    K+  
Sbjct: 110 ISNGRGSINPKGLQFYKNFIQELVKHGIEPHVTLHHYDFPQYLEDDYGGWTNRKIIKDFT 169

Query: 519 EYNDTNEFELKNH 531
            Y D    E  NH
Sbjct: 170 AYADVCFREFGNH 182


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,098,949
Number of Sequences: 28952
Number of extensions: 496881
Number of successful extensions: 1441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 3
length of query: 533
length of database: 12,070,560
effective HSP length: 84
effective length of query: 449
effective length of database: 9,638,592
effective search space: 4327727808
effective search space used: 4327727808
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)