GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001231-TA|BGIBMGA001231-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR004878|Protein of unknown
function DUF270
         (533 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.25 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.33 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    26   0.75 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   9.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 195  WLNVVVQDTRDDIVDVAYDQPILFRYANISGHKQIDINDKLDNLT--IEEIVDYPKPLLS 252
            WL          +VD  YD P L +Y +       D + + D +T  +  +  +P+   +
Sbjct: 1981 WLLSAAVSPSRRVVDAGYDVPTLSKYLDWIAVMCYDYHGQWDKITGHVAPMYAHPEDADA 2040

Query: 253  VFNNNRT 259
             FN N T
Sbjct: 2041 TFNTNFT 2047


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 208 VDVAYDQPILFRYANISGHKQIDINDKLDNLTIEEIVDYPKPLLSVFN 255
           VD++YD P L +Y +I      D+    D +T      YP  + +  N
Sbjct: 186 VDISYDVPALSKYLDIINVMAYDLRGSWDGVTGHHSGLYPSAVDTTTN 233


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 204 RDDIVDVAYDQPILFRYANISGHKQIDINDKLDNLTIEEIVDY 246
           R  +V    D P   + A  S   Q+++N++ +NLT +  V Y
Sbjct: 210 RKQLVSEHPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPY 252


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 235 LDNLTIEEIVDYPKPLLSVFNNN 257
           L  L I+E VDY KPL+     N
Sbjct: 765 LKRLGIDESVDYTKPLVDAQTMN 787


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 323 KQHVELALLQINIWETILFVLM 344
           K H  L  L + +W T+ F+L+
Sbjct: 245 KDHNSLYSLHLLLWITVTFILL 266


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,411
Number of Sequences: 317
Number of extensions: 5689
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 533
length of database: 114,650
effective HSP length: 60
effective length of query: 473
effective length of database: 95,630
effective search space: 45232990
effective search space used: 45232990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)