Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.18 
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 31   1.6  
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     29   8.7  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 296  FGFMHMLATNLCEWLYVLVEETKHEI 321
            F  MH++  N+C W YV++EE+  ++
Sbjct: 1245 FFLMHIIGVNMCSWFYVIIEESAEDM 1270


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 226 LRLGAIAFGIGSMVYSGLEFGEYFEMTDQCRSILAVITPALRMTLTLAQMPFIFLTNKDI 285
           L  GA  FG GS V   L    Y E +    S+   +  A+      +Q+ F+    K  
Sbjct: 164 LMAGAYVFGAGSCVMDLLHIAFYVECSSNLPSLFFSVFKAV---FIFSQILFL---RKFA 217

Query: 286 ELGSHKMIQ-RFGFMHMLATNLCEWLYVLVEETK 318
               HK    R    H+L TN+C W   L   ++
Sbjct: 218 TATLHKSPSIRLVLFHILGTNVCIWFRALFSHSR 251


>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1177

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 314 VEETKHEIHHLEHAMLSPENTTHNVTEEISCRRSNI 349
           +E  + E+   EHAM+S EN      E + C+ S I
Sbjct: 152 LERRQREVEEKEHAMISRENELLQEIESLKCKNSEI 187


>SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 32  GTPADPLIQHSHSQPNSRRMSSDIETKQLAANLNTRRPSAI 72
           GT A  L+ HS +QP  RR  S+     +A+ + T  P  +
Sbjct: 310 GTRASKLLSHSDAQPKCRRERSEERRWLIASYIRTSSPEIL 350


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 211  KLKIKETISRYGSFYLRLGAIAFGIGSMVYSGLE 244
            K  IK  I RYGS  +R G I FG   ++  G E
Sbjct: 5429 KNTIKSIIDRYGSTSIRYGVIVFGGVPVIKMGFE 5462


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 20  LGRLRERTKAMLGTPADPLIQHSHSQPNSRRMSSDIETKQLAANL 64
           L RL E+ K M G+      +H H   N+ R   +   +QLA ++
Sbjct: 784 LARLAEKAKEMSGSSKGKTEKHHHDLSNAVRARQETNIEQLATSI 828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,067
Number of Sequences: 59808
Number of extensions: 474007
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 16
length of query: 503
length of database: 16,821,457
effective HSP length: 85
effective length of query: 418
effective length of database: 11,737,777
effective search space: 4906390786
effective search space used: 4906390786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)