GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   1.5  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   6.1  

>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 426 LYTMTLIAAGAALLQMRALPYKRKSQAVLGLDTSLLILAQTGMFVYCMFSLIGCHHTMNS 485
           L+    + + + LL+  A  Y      ++ LD +LL ++  G+F + MF      +T+NS
Sbjct: 106 LFWSYYVLSNSELLEFEASEYSLLFILIIALD-ALLTVSLFGLFHHLMFLTTNYSYTINS 164

Query: 486 NNSSGYTGFFSEFLS 500
                  GFF   LS
Sbjct: 165 TLDIS-KGFFINVLS 178


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 284 DIELGSHKMIQRFGFMHMLATNLCEWLYVLVEETKHEIHHLEHAMLSPENTTHN 337
           D+ +   K I  F +   +AT++C+ L  ++E T  E  +   AM+   + T N
Sbjct: 315 DVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPLQAMIPSISNTKN 368


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,722
Number of Sequences: 5004
Number of extensions: 65288
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 2
length of query: 503
length of database: 2,362,478
effective HSP length: 76
effective length of query: 427
effective length of database: 1,982,174
effective search space: 846388298
effective search space used: 846388298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)