GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    31   2.1  
02_05_0455 - 29154374-29155136,29155257-29156455,29156904-291570...    29   6.5  
05_04_0383 - 20801036-20801309,20801413-20801538,20801706-208017...    29   8.6  

>03_02_0913 +
           12344096-12344125,12344284-12345970,12346243-12346573,
           12346712-12347567,12347760-12347883,12348469-12348688,
           12348771-12349229,12349318-12349519
          Length = 1302

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 23/87 (26%), Positives = 35/87 (40%)

Query: 200 KEDKGRTTPAEKLKIKETISRYGSFYLRLGAIAFGIGSMVYSGLEFGEYFEMTDQCRSIL 259
           +ED      +   KI+ET   + S Y   G     IGS   +  EFGE+ E  ++  + +
Sbjct: 727 REDDDELHNSLHAKIRETTENHLSGYSSEGLRTLVIGSKNLTDAEFGEWQERYEEASTSM 786

Query: 260 AVITPALRMTLTLAQMPFIFLTNKDIE 286
              +  LR    L +     L    IE
Sbjct: 787 TERSAKLRQAAALVECNLTLLGATGIE 813


>02_05_0455 -
           29154374-29155136,29155257-29156455,29156904-29157011,
           29157129-29157314,29157761-29157859,29159613-29159773,
           29160856-29160913
          Length = 857

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 277 FIFLTNKDIELGSHKMIQRFGFMHMLATNLCEWLYVLVEETKHEIHHLEHAMLSPEN--T 334
           F FL N+D           F F  +  +N    +  + EE          + L  E   T
Sbjct: 574 FDFLMNEDGSYSMQAQKVGFQFFRVFLSNSRTNILHMNEEAFRLFASFIDSELKTEALLT 633

Query: 335 THNVTEEISCRRSNIMGALLQP 356
            H + + +SCR+S++M +++ P
Sbjct: 634 LHELVQHLSCRQSHLMASIITP 655


>05_04_0383 -
           20801036-20801309,20801413-20801538,20801706-20801730,
           20801808-20802259,20802330-20802394,20802487-20802711,
           20804750-20804878,20805095-20805306,20806861-20806894
          Length = 513

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 347 SNIMGALLQP--GMLGV-SSPHGSRTALHHFSVDCSHAHR 383
           S  M  L+ P  G +G  SS HGSR +L  FS DC H H+
Sbjct: 164 SGRMTLLMPPPSGSVGAASSGHGSRLSL--FSDDCEHRHK 201


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,410
Number of Sequences: 37544
Number of extensions: 416484
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 3
length of query: 503
length of database: 14,793,348
effective HSP length: 85
effective length of query: 418
effective length of database: 11,602,108
effective search space: 4849681144
effective search space used: 4849681144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)