GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   4.7  
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    24   8.3  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 283  KDIELGSHKMIQRFGFMHMLATNLCEWLYVLVEETKHEIHHLEHAMLSPENTTHN 337
            KDIE   +  +            LCE +  L +E +   H L+H + S  + + N
Sbjct: 3230 KDIEEDFNVFLSTVNHSRTFYYQLCERIAALSDELEESRHILQHKLYSNNSQSLN 3284


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 307 CEWLYVLVEETKHEIHHLEHAMLSPENTTHNVTEEIS 343
           C  +    E+T  E  H E    +PE +T   TEE S
Sbjct: 15  CIVVIASAEKTDQEAEHGETVPATPEPSTTEATEEES 51


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,860
Number of Sequences: 2123
Number of extensions: 14855
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 2
length of query: 503
length of database: 516,269
effective HSP length: 67
effective length of query: 436
effective length of database: 374,028
effective search space: 163076208
effective search space used: 163076208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)