GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.          56   3e-07
BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.          56   3e-07

>BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 56.0 bits (129), Expect = 3e-07
 Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 204 GRTTPAEKL-KIKETISRYGSFYLRLGAIAFGIGSMVYSGLEFGEYFEMTDQCRSILAVI 262
           GR++   +L ++K+T +  G+ +LR     F + +++   L+ G YF    +C S    +
Sbjct: 112 GRSSAHRRLFRLKDTHA--GAGWLRGSITLFAVITVILGCLKIG-YFIGFSECLSATEGV 168

Query: 263 TPALRMTLTLAQMPFIFLTNKDIELGSHKMIQRFGFMHMLATNLCEWLYVLVEETKHEIH 322
            P      TL Q+ F++   KDI + S K ++RFG +H + TNL  W   ++ E+KH+++
Sbjct: 169 FPVTHSVHTLLQVYFLWGHAKDI-IQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQLN 227

Query: 323 HLEHAMLS 330
             +  +++
Sbjct: 228 EHKERLIT 235


>BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 56.0 bits (129), Expect = 3e-07
 Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 204 GRTTPAEKL-KIKETISRYGSFYLRLGAIAFGIGSMVYSGLEFGEYFEMTDQCRSILAVI 262
           GR++   +L ++K+T +  G+ +LR     F + +++   L+ G YF    +C S    +
Sbjct: 112 GRSSAHRRLFRLKDTHA--GAGWLRGSITLFAVITVILGCLKIG-YFIGFSECLSATEGV 168

Query: 263 TPALRMTLTLAQMPFIFLTNKDIELGSHKMIQRFGFMHMLATNLCEWLYVLVEETKHEIH 322
            P      TL Q+ F++   KDI + S K ++RFG +H + TNL  W   ++ E+KH+++
Sbjct: 169 FPVTHSVHTLLQVYFLWGHAKDI-IQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQLN 227

Query: 323 HLEHAMLS 330
             +  +++
Sbjct: 228 EHKERLIT 235


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,479,704
Number of Sequences: 224733
Number of extensions: 2194071
Number of successful extensions: 4173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4169
Number of HSP's gapped (non-prelim): 2
length of query: 503
length of database: 73,234,838
effective HSP length: 93
effective length of query: 410
effective length of database: 52,334,669
effective search space: 21457214290
effective search space used: 21457214290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 67 (31.1 bits)