GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    33   0.58 
At4g32260.1 68417.m04590 ATP synthase family contains Pfam profi...    31   1.3  
At2g31800.1 68415.m03882 ankyrin protein kinase, putative simila...    30   3.1  
At4g02235.1 68417.m00303 MADS-box family protein contains Pfam p...    30   4.1  
At4g00790.1 68417.m00109 expressed protein                             30   4.1  

>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 312 VLVEETKHEIHHLEHAMLSPENTTHNVT-EEISCRRSNIMGALLQ 355
           V   +  HE+    H ++ PEN  HN+T EE+  R S I    L+
Sbjct: 99  VATNDDDHEVGQKGHYLMMPENVVHNMTEEELLLRASKIQEKTLK 143


>At4g32260.1 68417.m04590 ATP synthase family contains Pfam
          profile: PF00430 ATP synthase B/B' CF(0); identical to
          cDNA chloroplast ATP synthase beta chain precursor
          (atpG) GI:5730140
          Length = 219

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 46 PNSRRMSSDIETKQLAANLNTRRPSAIIAAFRRPSQALAL 85
          P S   S+D+ +K L+ +  T +  A+IAAF  PS A A+
Sbjct: 37 PKSLTSSTDLRSKALSLSSATAKSLALIAAFAPPSMAEAM 76


>At2g31800.1 68415.m03882 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674; contains Pfam profile PF00023:
           Ankyrin repeat; identical to cDNA calcineurin B-like
           protein 10 (CBL10) GI:29150247; blastp match of 67%
           identity and 1.9e-200 P-value to
           GP|18700701|gb|AAL78674.1|AF458699_1|AF458699
           ankyrin-kinase {Medicago truncatula}
          Length = 476

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 177 QYANIMRQKAVTMIISNYGPDGE----KEDKGRTTPAEKLKIKETISRYGSFYL 226
           Q+   + Q    MI+S Y P G+     + KGR +PA+ L+    I+R G  YL
Sbjct: 252 QFVGAVTQNVPMMIVSEYHPKGDLGSYLQKKGRLSPAKVLRFALDIAR-GMNYL 304


>At4g02235.1 68417.m00303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); low similarity to
           APETALA3 homolog PcAP3 [Papaver californicum] GI:3170498
          Length = 196

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 186 AVTMIISNYGPDGEKEDKGRTTPAEKLKIKETISRY 221
           A+ + +  YGPDGE     RT P E+  +K+  SRY
Sbjct: 37  AIDVCVIYYGPDGEL----RTWPKERNTVKDMASRY 68


>At4g00790.1 68417.m00109 expressed protein 
          Length = 435

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 305 NLCEWLYVLVEETKHEIHHLEHAMLSPENTTHNVTEEIS--CRRSNIMGALLQPGMLGVS 362
           ++  + +V  E  KHE H LE+  +S E+ T     E+S      N++ AL+     GVS
Sbjct: 8   DVLRYAFVENEMVKHESHLLEYGEVSVESKTDGSLPEVSNDILIQNLVDALVHVPDWGVS 67

Query: 363 SPHG 366
           +  G
Sbjct: 68  NESG 71


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,596
Number of Sequences: 28952
Number of extensions: 335105
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 5
length of query: 503
length of database: 12,070,560
effective HSP length: 84
effective length of query: 419
effective length of database: 9,638,592
effective search space: 4038570048
effective search space used: 4038570048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)