Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    18   7.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    18   7.4  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory
          receptor candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 1.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 6  EVFALEYQLW 15
          E F+LE+QLW
Sbjct: 30 EKFSLEHQLW 39


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 16  WRSSTVRSLAAVEMLAAPS 34
           W+    R+ A  E+L  PS
Sbjct: 83  WKHLDFRNSATAELLKNPS 101


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 16  WRSSTVRSLAAVEMLAAPS 34
           W+    R+ A  E+L  PS
Sbjct: 83  WKHLDFRNSATAELLKNPS 101


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788
Number of Sequences: 317
Number of extensions: 303
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 114,650
effective HSP length: 44
effective length of query: 22
effective length of database: 100,702
effective search space:  2215444
effective search space used:  2215444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.9 bits)
S2: 34 (17.8 bits)