Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)                 25   6.5  
SB_14989| Best HMM Match : UPF0181 (HMM E-Value=0.11)                  25   6.5  

>SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)
          Length = 374

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 20  TVRSLAAVEMLAAPSPRTVRLQGFGIWDFSVELKR 54
           TVR+ A V +    S R   L GFG++ + + LK+
Sbjct: 106 TVRNKALVPLRIELSKRHKELDGFGLYLYGLVLKK 140


>SB_14989| Best HMM Match : UPF0181 (HMM E-Value=0.11)
          Length = 446

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 10  LEYQLWWRSSTVRS---LAAVEMLAAPSPRTV 38
           +E  LWWR+ST+     L+ +E+L   SP TV
Sbjct: 81  VELVLWWRTSTLYLFLWLSLMELLEDLSPVTV 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,943
Number of Sequences: 59808
Number of extensions: 41506
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 2
length of query: 66
length of database: 16,821,457
effective HSP length: 45
effective length of query: 21
effective length of database: 14,130,097
effective search space: 296732037
effective search space used: 296732037
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)