Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   6.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 42  GFGIWDFSVELKRAMKISHEF 62
           G+G+  +S E  R+ +I+H +
Sbjct: 214 GYGLIVYSWEQNRSWRITHSY 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 14  LWWRSSTVRSLAAVEMLAAPSPRTVRLQGFGIWDFS 49
           LW   +  +S   +++   P  +   +  FG W F+
Sbjct: 140 LWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFN 175


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 29  MLAAPSPRTVRLQGFGI 45
           +LA P+  T  LQ FG+
Sbjct: 571 LLATPTTVTCILQRFGV 587


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 29  MLAAPSPRTVRLQGFGI 45
           +LA P+  T  LQ FG+
Sbjct: 661 LLATPTTVTCILQRFGV 677


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 33  PSPRTVRLQGFGIWDFSVELKRAMKISHEFSYRI 66
           P+P+ +  Q   + DFS     A++   EF+ RI
Sbjct: 223 PNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRI 256


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630
Number of Sequences: 429
Number of extensions: 371
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)