GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    23   6.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    22   8.7  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 863

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 1  MTCASEVFALEYQLWWRSSTVRSLAAVEMLA 31
          +T   E   LEYQ  W+S  V     V+ LA
Sbjct: 65 ITAREEARKLEYQQLWQSLPVEIKQQVKSLA 95


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 3   CASEVFALEYQLWWRSSTVRSLAAVEMLAAPSPR 36
           C       + QL  + +TVRS++ VE   +  PR
Sbjct: 642 CTLAALDEDLQLLTKKTTVRSVSVVETERSSPPR 675


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,601
Number of Sequences: 5004
Number of extensions: 6025
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 66
length of database: 2,362,478
effective HSP length: 46
effective length of query: 20
effective length of database: 2,132,294
effective search space: 42645880
effective search space used: 42645880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)