GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0563 - 17195605-17196681                                         29   0.62 
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           26   3.3  
09_02_0526 + 10219803-10221107                                         25   5.7  
06_03_1288 + 29014144-29014376,29015192-29015771,29015929-290163...    25   5.7  
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    25   7.6  
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339...    25   7.6  
01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146           25   7.6  

>04_03_0563 - 17195605-17196681
          Length = 358

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 10 LEYQL-WWRSSTVRSLAAVEMLAAPSPRTVRLQGF 43
          LEYQ  WW  S V+++ A++    P P  V L  +
Sbjct: 62 LEYQATWWPESAVQAVIAIQRRFRPRPSDVLLASY 96


>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 12  YQLWWRSSTVRSLAAVEMLAA 32
           +Q+WWR S VRS   V ++ +
Sbjct: 548 FQVWWRRSFVRSSVEVNLVTS 568


>09_02_0526 + 10219803-10221107
          Length = 434

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 18  SSTVRSLAAVEMLAAPSPRTVRL--QGFGIWDFSVELKRAMKISHEFSY 64
           S  V  L  V++L       V    +G G+W FSV+L+  M++ H + +
Sbjct: 358 SRLVERLTGVKILEVMGRSVVLTPPEGSGMWPFSVDLE-TMELEHVYDW 405


>06_03_1288 +
           29014144-29014376,29015192-29015771,29015929-29016320,
           29016636-29016663,29017207-29017417,29017551-29017819
          Length = 570

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 1   MTCASEVFALEYQLWWRSSTVRSLAAVEMLAAPSPRTVRLQGFGIWDFSV 50
           +TC  E+F  +  ++   + ++   AVEM        +R +G+ ++D  V
Sbjct: 371 LTCIPEIFEHDAMIYLLKNNLKVCKAVEMAGVKIEAALRKKGY-LYDLQV 419


>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 15  WWRSSTVRSLAAVEMLAAPSPRT 37
           WW  +TVR++  V+ L   SP T
Sbjct: 529 WWLLTTVRNICDVDSLPLGSPWT 551


>01_06_1692 -
          39232475-39232867,39233176-39233310,39233770-39233916,
          39234131-39234303,39235201-39235288,39235508-39235725,
          39235968-39236025,39236259-39236315,39237022-39237099
          Length = 448

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 17 RSSTVRSLAAVEMLAAPSPRTVR 39
          R+S  R++AAV   AAP P T R
Sbjct: 7  RASLRRAVAAVAAAAAPCPETCR 29


>01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146
          Length = 653

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 21  VRSLAAVEMLAAPSPRTVRLQGFGIWDF 48
           +RS A +     P P+  R+QG+GI  F
Sbjct: 88  LRSTADLPKYVDPLPQMARIQGYGINQF 115


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,282
Number of Sequences: 37544
Number of extensions: 44433
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)