GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113573-1|AAM29578.1|  253|Drosophila melanogaster RH19795p pro...    26   7.4  
AY051555-1|AAK92979.1|  604|Drosophila melanogaster GH20501p pro...    26   7.4  
AE014297-4450|AAN14189.1|  130|Drosophila melanogaster CG7829-PB...    26   7.4  
AE014297-4449|AAF56947.1|  253|Drosophila melanogaster CG7829-PA...    26   7.4  
AE013599-1597|AAF58448.2|  604|Drosophila melanogaster CG3790-PA...    26   7.4  

>AY113573-1|AAM29578.1|  253|Drosophila melanogaster RH19795p
          protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 12 YQLWWRSSTVRSLAAVEMLAAPSPRTV 38
          Y+LWW+   +++   + + + P PR V
Sbjct: 3  YKLWWKLLLLQASGCLSLESRPDPRIV 29


>AY051555-1|AAK92979.1|  604|Drosophila melanogaster GH20501p
           protein.
          Length = 604

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 1   MTCASEVFALEYQLWWRSSTVRSLAAVEMLAAPSPRTVRLQG 42
           + CA+  FA  Y  W     V  L    +LA+P    + L G
Sbjct: 194 IACAASAFAWNYYTWLGLRFVVGLTVPAILASPYVLAIELVG 235


>AE014297-4450|AAN14189.1|  130|Drosophila melanogaster CG7829-PB,
          isoform B protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 12 YQLWWRSSTVRSLAAVEMLAAPSPRTV 38
          Y+LWW+   +++   + + + P PR V
Sbjct: 3  YKLWWKLLLLQASGCLSLESRPDPRIV 29


>AE014297-4449|AAF56947.1|  253|Drosophila melanogaster CG7829-PA,
          isoform A protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 12 YQLWWRSSTVRSLAAVEMLAAPSPRTV 38
          Y+LWW+   +++   + + + P PR V
Sbjct: 3  YKLWWKLLLLQASGCLSLESRPDPRIV 29


>AE013599-1597|AAF58448.2|  604|Drosophila melanogaster CG3790-PA
           protein.
          Length = 604

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 1   MTCASEVFALEYQLWWRSSTVRSLAAVEMLAAPSPRTVRLQG 42
           + CA+  FA  Y  W     V  L    +LA+P    + L G
Sbjct: 194 IACAASAFAWNYYTWLGLRFVVGLTVPAILASPYVLAIELVG 235


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,008
Number of Sequences: 52641
Number of extensions: 64580
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 24,830,863
effective HSP length: 46
effective length of query: 20
effective length of database: 22,409,377
effective search space: 448187540
effective search space used: 448187540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)