GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001229-TA|BGIBMGA001229-PA|undefined
         (66 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    28   0.67 
At3g53310.1 68416.m05881 transcriptional factor B3 family protei...    28   0.88 
At1g51610.1 68414.m05814 cation efflux family protein / metal to...    25   8.2  

>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain; PMID:
           12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 5   SEVFALEYQLW-WRSSTVRSLAAVE 28
           SEVF +E+QLW W+S   R  A +E
Sbjct: 717 SEVFQIEFQLWVWKSIAKRLKAELE 741


>At3g53310.1 68416.m05881 transcriptional factor B3 family protein
          contains Pfam profile PF02362: B3 DNA binding domain
          Length = 286

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 24 LAAVEMLAAPSPRTVRLQGFGIWDFSVELKR 54
          L  +  LA P P+TV+LQG G   ++V LK+
Sbjct: 28 LPFMAFLADPLPKTVKLQGLGGKLWTVSLKK 58


>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 3   CASEVFALEYQLWWRSSTVRSLAAV 27
           C   VF+L++ +WW SS+   +A V
Sbjct: 123 CNFLVFSLKFGVWWTSSSHVIMAEV 147


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.131    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,091
Number of Sequences: 28952
Number of extensions: 32257
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 12,070,560
effective HSP length: 46
effective length of query: 20
effective length of database: 10,738,768
effective search space: 214775360
effective search space used: 214775360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)