GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    28   3.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   5.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   7.0  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 410 VLWSILGHVSLPLIMFYRFHSSVCFADIWD 439
           +LW ILG +  P+++F+ F S  C  DI D
Sbjct: 607 LLWEILGILLTPVLLFFTFPS--CSQDIVD 634


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 303 LLDDVLLFICLPAFFMETFFSLIATIS---ILNIVKTIDFIVMFIQVTIQ 349
           L+ D+  F  +P FF  TF +L+  ++   + +I+K  D++V  +  T+Q
Sbjct: 249 LMRDIKFFPGVPPFF--TFINLLNNVAKEKLTHIIKYDDYLVHLVHETLQ 296


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 193 SELNSTDDDNTTICRIPTANEENDFTSNI 221
           SE+ S D+++     IP  +E+N++ SN+
Sbjct: 134 SEVVSDDEEDGNFASIPELHEDNEYHSNL 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,377
Number of Sequences: 5004
Number of extensions: 86081
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 4
length of query: 448
length of database: 2,362,478
effective HSP length: 75
effective length of query: 373
effective length of database: 1,987,178
effective search space: 741217394
effective search space used: 741217394
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)