Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 31 1.4
09_04_0500 - 18120287-18122233 31 1.9
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 30 3.3
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043... 30 4.3
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 30 4.3
02_05_0438 + 28997551-28997664,28997769-28997977,28998087-28998372 30 4.3
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 29 5.7
10_08_0648 + 19579299-19580618 29 5.7
04_03_0842 - 20234173-20234388,20235335-20235361 29 7.6
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 29 10.0
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 29 10.0
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377... 29 10.0
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 5 DFGAPGTPGDRTPEFKAPNFRPPTLIPMLHQYCFSQGRHSGSFYLKL 51
D G RTP A + PPT IP H+ FS RH + L L
Sbjct: 359 DLTGKGDSHGRTPLHFAVSIEPPTKIPYYHKILFSIMRHIDIYTLCL 405
>09_04_0500 - 18120287-18122233
Length = 648
Score = 31.1 bits (67), Expect = 1.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 181 SNIGNCDNEDNESELNST---DDDNTTICRIPTANEENDFTSNIVIYADCHASNKGL 234
S + CD ED E E + +DD+ + + N +N F+ +I + AS KGL
Sbjct: 495 SKLDECDEEDGEEEEDDDGDEEDDDEDMFKDDAGNLKNPFSKHIPSVSKLSASFKGL 551
>11_04_0442 -
17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 30.3 bits (65), Expect = 3.3
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 347 TIQTPLIMDGLRRCSNTKKLRRSKPGRELLMFLLIANVGMWLLYTFSYKSPESLDERYAF 406
T+ +PL MD + SK + FL G WL + YK P A
Sbjct: 767 TVSSPLTMDNAILLLEWIRNLNSKGSQLPARFLACIKQGSWLKTSVGYKPPNESFLSGAE 826
Query: 407 YGKVLWSILGHVSLPLI 423
+G +L + V +P+I
Sbjct: 827 WGSLLQTGSSFVDIPMI 843
>04_04_1347 +
32803664-32803796,32803891-32804093,32804202-32804383,
32804514-32804798,32804901-32804959,32805052-32805088,
32805186-32805257,32805336-32806005
Length = 546
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 228 HASNKGLFAGLILMVIIAGMLIIGFVFSSVGEEFLELGYLLNNCTKLTLHTLMLIASLVT 287
H +K + +++ ++ G+ I GF+FS +G FL ++ L + T+M+ A+ +
Sbjct: 263 HVMDKMQYNLMVIAAVMLGLAIFGFLFSILGLRFLVSLLVIAGWFVLVI-TIMMSAAFLL 321
Query: 288 LNQL 291
L+ +
Sbjct: 322 LHNV 325
>04_04_0027 +
22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 GNCDNEDNESELNSTDDDNTTI 205
GN D ED++SE +S DDD+ I
Sbjct: 222 GNSDGEDDDSEYDSEDDDSEMI 243
>02_05_0438 + 28997551-28997664,28997769-28997977,28998087-28998372
Length = 202
Score = 29.9 bits (64), Expect = 4.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 226 DCHASNKGLFAGLILMVIIAGMLIIG 251
DC+ + G+F G +V++ +LI+G
Sbjct: 138 DCYVARNGVFGGAAALVVVTALLILG 163
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 57 ALGHLIHSVLLLAVQIGHFLDEDVNNDD 84
A+G LI VL+L+ IG +LD + N+D+
Sbjct: 201 AIGCLIQFVLMLSSPIGRWLDNNFNDDE 228
>10_08_0648 + 19579299-19580618
Length = 439
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 77 DEDVNNDDCVNILQVVLDVMFPLYCFVQLYFI 108
D+D ++DDC + L + D +PL C V+ + +
Sbjct: 263 DDDDDDDDCADTLAGLGDEDYPLKCLVETHLV 294
>04_03_0842 - 20234173-20234388,20235335-20235361
Length = 80
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 211 ANEENDFTSNIVIYADCHASNKGLFAGLILMVIIAGMLIIGFV 253
A++ D +N+VI NKGL G+I+++++A L++ FV
Sbjct: 2 ADQFADSANNVVI----EEVNKGLNPGMIVLIVVATFLLLFFV 40
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 28.7 bits (61), Expect = 10.0
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 71 QIG-HFLDEDVNNDDCVNILQV-VLDVMFPLYCFVQLYFIFKYSNVIILRYQNLARFAFM 128
Q+G HF++E +N + + V FP + ++++ +F Y + ++ LA F
Sbjct: 256 QLGQHFIEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRFC 315
Query: 129 H--MIGSSLCFWVSAIVRETILG 149
H ++ +++A V I G
Sbjct: 316 HDELVNILFALFLAAFVLSLIFG 338
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 22 PNFRPPTLIPMLHQYCFSQGRHSGSFYLKLGAAGFALGHLIHSVLLLA 69
PNF T LH + +S+G +G +YL+ AA A+ + + LL A
Sbjct: 781 PNFGKLT---SLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTALLKA 825
>01_06_0291 -
28236235-28236576,28236785-28236900,28237560-28237731,
28238916-28239044,28239165-28239320
Length = 304
Score = 28.7 bits (61), Expect = 10.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 244 IAGMLIIGFVFSSVGEEFLELGYLLNN 270
I G++++ S +G+EF+ +GY +NN
Sbjct: 205 IIGVIVLLLTCSYMGQEFIRVGYYVNN 231
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.143 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,583
Number of Sequences: 37544
Number of extensions: 495652
Number of successful extensions: 1363
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 16
length of query: 448
length of database: 14,793,348
effective HSP length: 84
effective length of query: 364
effective length of database: 11,639,652
effective search space: 4236833328
effective search space used: 4236833328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)
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