GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   2e-09
SB_1144| Best HMM Match : S-antigen (HMM E-Value=1.2)                  35   0.15 
SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061)                  33   0.36 
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 32   0.82 
SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024)                    31   1.9  
SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71)                  31   2.5  
SB_49767| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.3  
SB_37095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.3  
SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)                     29   5.8  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   5.8  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 26/187 (13%)

Query: 273  KLTLHTLMLIASLVTLNQLRKLDINEHPIS-----LLDDVLLFICLPAFFMETFFSLIAT 327
            ++ ++ +M  ASLV +N L    ++ HP S     ++D VLL I +   F+ T F ++  
Sbjct: 1422 RILIYIMMAFASLVGINCL----VHFHPSSSSSHTIVDTVLLMIGISGAFILTGFQIVVG 1477

Query: 328  ISILNIVKTIDFIVMF--------IQVTIQTPLIMDGLRRCSNT--KKLRRSKPGRELLM 377
             + L   +   ++  F        +Q T+QT  ++  L R + +   ++ R    R L  
Sbjct: 1478 FTELKSKRDKTYVTFFLLDAVAATVQFTVQTLFVIRALLRSAESYDNEVYRDVSIRTLSW 1537

Query: 378  F-------LLIANVGMWLLYTFSYKSPESLDERYAFYGKVLWSILGHVSLPLIMFYRFHS 430
            F       L I N  +W + TF     E  +   +     +WS++ H++ PL +F+R HS
Sbjct: 1538 FIRQIAALLSIVNFALWAMNTFEINFKEMNNPEISVIDSTVWSVVRHIAYPLCIFFRLHS 1597

Query: 431  SVCFADI 437
              C  +I
Sbjct: 1598 VFCCFEI 1604



 Score = 33.5 bits (73), Expect = 0.36
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 104  QLYFIFKYSNVIILRYQNLARFAFMHMIGSSLCFWVSAIVRET 146
            QLYF  ++SN         + F  MH+IG ++C W   I+ E+
Sbjct: 1225 QLYFFCRFSNKSFFNRWG-SSFFLMHIIGVNMCSWFYVIIEES 1266


>SB_1144| Best HMM Match : S-antigen (HMM E-Value=1.2)
          Length = 557

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 10/56 (17%)

Query: 201 DNTTICRIPTANEENDFTSNIVIYADCHASNKGLFAGLI--LMVIIAGMLIIGFVF 254
           +NTT+ ++PT       TS+        + N GL AGL+  L++++  +++IGFVF
Sbjct: 82  ENTTVLQVPTNGGRKRTTSS--------SGNSGLIAGLVVFLLLLVLAVILIGFVF 129


>SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061)
          Length = 425

 Score = 33.5 bits (73), Expect = 0.36
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 182 NIGNCDNEDNESELNSTDDDNTTICRIPTANE 213
           N+GN DN+D   + +   DD    C + TANE
Sbjct: 170 NVGNADNDDTSGDFDGDFDDALDDCGLTTANE 201


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 32.3 bits (70), Expect = 0.82
 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 87  NILQVVLDVMFPLYCFVQLYFIFKYSNVIILRYQNLARFAFMHMIGSSLCFWVSAI 142
           N+  +   V   ++ F Q+ F+ K++   + +  ++ R    H++G+++C W  A+
Sbjct: 192 NLPSLFFSVFKAVFIFSQILFLRKFATATLHKSPSI-RLVLFHILGTNVCIWFRAL 246


>SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024)
          Length = 172

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 184 GNCDNEDNESELNSTDDDNTTICRIPTANEENDFTSNIVIYADCHASNKGLFAGLILMVI 243
           G+ D    E +LN  D +     R+ T N+     S  +        N  L  G+++ V+
Sbjct: 82  GSVDEGTREFQLNDLDPETEYKIRVATHNQHGKTNSEPIRATTEAKPNIALILGIVIPVV 141

Query: 244 IAGMLIIGF 252
           I  ++++ F
Sbjct: 142 ILVVIVVAF 150


>SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71)
          Length = 279

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 274 LTLHTLMLIASLVTLNQLRKLDINEHPISLLDDVL---LFICLPAFFME-TFFSLIATIS 329
           +TL TL ++ +LVTL+    + +    +S++D ++   + + L   F+  T  +L    +
Sbjct: 20  VTLVTLSIVVTLVTLS----ITVTLVTLSIMDTLVTLSIMVTLKTLFITVTLVTLSIMDT 75

Query: 330 ILNIVKTIDFIVMFIQVTIQTPLIMDGL 357
           ++ +  T+  + + I VT+ T  IMD L
Sbjct: 76  LVTLSITVTLVTLSIMVTLVTLSIMDTL 103


>SB_49767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 184 GNCDNEDNESELNSTDDDNTTICRIPTANEENDF 217
           G  DN+D+ ++ +  DDD+     I   N+++D+
Sbjct: 148 GGYDNDDDNNDADDNDDDDGVYVNIDDGNDDDDY 181


>SB_37095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 175 VYFIIWSNIGNCDNEDNESELNSTDDDNTTI 205
           +Y  ++S+I N D++D+    N  DDDN  I
Sbjct: 8   IYLSLFSSIYNKDDDDHNKNNNENDDDNIMI 38


>SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 23/111 (20%), Positives = 51/111 (45%)

Query: 238 LILMVIIAGMLIIGFVFSSVGEEFLELGYLLNNCTKLTLHTLMLIASLVTLNQLRKLDIN 297
           +++M ++  +L +  +  +V    L +  LL     L L  +ML+ ++VTL     + + 
Sbjct: 26  MLVMTVVMLLLTVVMLLLTVVMLLLTVTILLLTVMMLLLTVVMLLLTVVTLLLTVVMLLL 85

Query: 298 EHPISLLDDVLLFICLPAFFMETFFSLIATISILNIVKTIDFIVMFIQVTI 348
              + LL  V+L + +    +     L+  + +L  V  +   VM + +T+
Sbjct: 86  TVVMLLLTVVMLLLTVVMLLLTVVMLLLTVVMLLLTVMMLLLTVMMLLLTV 136


>SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)
          Length = 521

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 177 FIIWSNIGNCDNEDNESELNSTDDDNTTICRIPTANEENDFTSNIVIYADCH 228
           ++  S IG  D+ D   ++++ DD++  +     AN++ND  +N  +  DCH
Sbjct: 233 YVDGSYIGADDDNDVADDIDANDDND--VADDIDANDDNDAYNNNDVADDCH 282


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 181 SNIGNCDNEDNESELNST-DDDNTTICRI-PTANEENDFTSN 220
           SN   CD+ D ES+ N T +D N  +C    T ++ ND  S+
Sbjct: 453 SNDTVCDSNDTESDDNDTVNDSNDAVCDTNDTVSDSNDSVSD 494


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 177 FIIWSNIGNCDNEDNESELNSTDDDNTTICRIPTANEENDFTSNIVIYADCH 228
           ++  S IG  D+ D   ++++ DD++  +     AN++ND  +N  +  DCH
Sbjct: 291 YVDGSYIGADDDNDVADDIDANDDND--VADDIDANDDNDAYNNNDVADDCH 340


>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 272 TKLTLHTLMLIASLVTLNQLRKLDINEHPISL 303
           T +TL TLM + +L+TL  L  L    H +SL
Sbjct: 460 TLMTLQTLMTLQTLMTLQTLMTLQTTRHAMSL 491


>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 181 SNIGNCDNEDNESELNSTDDDNTTICRIPTANEENDFTSNIVIYADCHASN 231
           S+I N +N DN S+ N  ++DN +       N  N+  +N    +D ++ N
Sbjct: 579 SDINNANNNDNNSDNNDNNNDNNSDNNNNNNNNNNNNNNNNDNNSDNNSDN 629


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 309 LFICLPAFFMETFFSLIATISILNIVKTIDFIVMFIQVTIQTPLIMDGLRRCSNTKKLRR 368
           +F C+P F M    +L+A I +  +V  I       +V I     M+  ++  +  +LRR
Sbjct: 781 VFDCMPLFVMAVLMNLLAGIIMWGLVGAIHNSTEH-RVGILKNARMNEDQQYKDVSELRR 839

Query: 369 SKPGRE---LLMFLLIANVGMWLLYTFSYKSPESLDERYAFYGKVL 411
           +   RE   +L+ +L+A      L+    +  + LD+R+  YG VL
Sbjct: 840 ALESREVRGILLDVLVAAEFQEDLFRPGIRVNKILDKRFG-YGIVL 884


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466,887
Number of Sequences: 59808
Number of extensions: 569021
Number of successful extensions: 2574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2551
Number of HSP's gapped (non-prelim): 28
length of query: 448
length of database: 16,821,457
effective HSP length: 84
effective length of query: 364
effective length of database: 11,797,585
effective search space: 4294320940
effective search space used: 4294320940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 62 (29.1 bits)