GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    29   0.19 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    29   0.19 
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            27   1.0  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    27   1.4  
AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant r...    26   1.8  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    24   9.6  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 269 NNCTKLTLHTLMLIASLVTLNQLRKLDINEHPISLLDDVLLFICLPAFFMETFFSLIATI 328
           + C+   LH ++     +T N+++K D  +  IS      + +     F+ T F++IAT+
Sbjct: 420 SGCSHKDLHHILKELQFIT-NRMKKADEEQELISDWKFAAMVVDRFCLFVFTLFTIIATV 478

Query: 329 SIL 331
           ++L
Sbjct: 479 TVL 481


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 269 NNCTKLTLHTLMLIASLVTLNQLRKLDINEHPISLLDDVLLFICLPAFFMETFFSLIATI 328
           + C+   LH ++     +T N+++K D  +  IS      + +     F+ T F++IAT+
Sbjct: 420 SGCSHKDLHHILKELQFIT-NRMKKADEEQELISDWKFAAMVVDRFCLFVFTLFTIIATV 478

Query: 329 SIL 331
           ++L
Sbjct: 479 TVL 481


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 198 TDDDNTTICRIPTANEENDFTSNIVIYAD 226
           T+DD T +CR+ T N E + T+  V++ +
Sbjct: 41  TEDDLTLLCRLRTINSELENTNFSVLHPE 69


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 318 METFFSLIATISILNIVKTIDFIVMFIQVTIQTPLIMDGLRRCSNTKKLRR 368
           + T  S     ++   ++T+D  V+F+Q    T L + G    SN    RR
Sbjct: 23  INTISSATKLEALKTFIRTMDLDVIFLQEVYHTDLALPGYNVLSNVDASRR 73


>AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant
           receptor Or5 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 301 ISLLD-DVLLFICLPAFFMETFFSLIATISILNIVKTIDFIVMFIQVTIQ 349
           +SL+D  +   I LP  FM  +F  +  ++I + VK    ++  + + IQ
Sbjct: 179 VSLVDYSIFTAIMLPTIFMLAYFGGLKLLTIFSNVKYCSAMLRLVAMRIQ 228


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 233 GLFAGLILMVIIAGMLIIGFVFSSVGEEFL--ELGYLLNNCTKLTLHTLMLIASL 285
           G    L  +  + GML++G +F +VG   L  E   +     KL L  +++ A L
Sbjct: 194 GFLISLTTLPRLIGMLMVGILFQNVGWVNLDGEFQIVTAELRKLALVIILIRAGL 248


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,536
Number of Sequences: 2123
Number of extensions: 18017
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 6
length of query: 448
length of database: 516,269
effective HSP length: 66
effective length of query: 382
effective length of database: 376,151
effective search space: 143689682
effective search space used: 143689682
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 49 (23.8 bits)