GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.98 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   5.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   9.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   9.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   9.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   9.1  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 99  LYCFVQLYFIFKYSNVI 115
           LYCF +L+FI  + N I
Sbjct: 7   LYCFARLFFIIGFFNAI 23


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 232 KGLFAGLILMVIIAGMLIIGFVFSS 256
           +G+  G++LM+     L++GFV S+
Sbjct: 9   EGMMIGVLLMLAPINALLLGFVQST 33


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 233 GLFAGLILMVIIAGMLIIGFVFSS 256
           GLF  LI++ I+   L+I  V ++
Sbjct: 42  GLFTMLIIVTIVGNTLVIAAVITT 65


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 229 ASNKGLFAGLILMVIIAGMLIIGFV 253
           +++ GL AG+++ V   G+L++  V
Sbjct: 127 STDPGLVAGIVIGVTSLGLLLLALV 151


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 229 ASNKGLFAGLILMVIIAGMLIIGFV 253
           +++ GL AG+++ V   G+L++  V
Sbjct: 98  STDPGLVAGIVIGVTSLGLLLLALV 122


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 303 LLDDVLL-FICLPAFFMETFFSLIATISILNIVKTIDFIVMFIQVTIQTPLIM 354
           +L  VL+ F+C+  F++        T+ I  ++  + F+++  ++   T L++
Sbjct: 241 ILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 293


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,330
Number of Sequences: 429
Number of extensions: 5216
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 7
length of query: 448
length of database: 140,377
effective HSP length: 60
effective length of query: 388
effective length of database: 114,637
effective search space: 44479156
effective search space used: 44479156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)