GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16750.1 68416.m02138 expressed protein ; expression supporte...    31   1.2  
At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein s...    31   1.6  
At4g13235.1 68417.m02058 hypothetical protein late embryogenesis...    29   6.3  
At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...    29   6.3  

>At3g16750.1 68416.m02138 expressed protein ; expression supported
           by MPSS
          Length = 194

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 182 NIGNCDNEDNESELNSTDDDNTTICRIPTANEENDFTSNIVIYAD 226
           N+GN DN+ ++ + +S DDD ++     ++++E+    NI  +A+
Sbjct: 148 NLGNSDNDSSDDDGSSNDDDGSSDDESHSSDDESAGDDNIEAHAN 192


>At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein
           surfeit-related contains similarity to Swiss-Prot:Q9QXU2
           surfeit locus protein 1 [Rattus norvegicus]
          Length = 384

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 278 TLMLIASLVTLNQLRKLD-INEHPISLLDDVLLFICLPAFFMETFFSLIATISILNIVK 335
           T  + AS + + +L K D I   PI +   +L+FIC   + +   F  I TI +  + K
Sbjct: 319 TCFIKASSILMRRLTKSDPIGVEPILIPISILVFICTKIYSLRNLFCKIDTIGVGCVTK 377


>At4g13235.1 68417.m02058 hypothetical protein late embryogenesis
           abundant protein -Picea glauca,PID:g1161171
          Length = 129

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 30  IPMLHQYCFSQGRHSGSFYLKLG--AAGFALGHLIHS--VLLLAVQIGHFLDEDVNNDDC 85
           +P  ++YC S G H G F  KL   A+  +  ++I +  +L+L +Q  ++L   V +D  
Sbjct: 56  LPRCNKYCVSNGFHLGGFCEKLSPQASYLSCVYVIMTCDLLILLIQFSYYL---VVHDHP 112

Query: 86  VNILQVVLDVMF 97
           +  L   L++ F
Sbjct: 113 IKYLVADLEMFF 124


>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 22  PNFRPPTLIPMLHQYCFSQGRHSGSFYLKLGAAGFALGHLIHSVLLLAVQIGHFLDEDVN 81
           PNF   T    LH Y + +G  +G +YL+  AA  A+   + + +L         D++V 
Sbjct: 734 PNFAKLT---SLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVE 790

Query: 82  NDDC-VNILQVVLDVMFPLYC 101
            +D    + Q+V  +  P  C
Sbjct: 791 EEDNETKLAQMVCSLTNPEEC 811


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,527
Number of Sequences: 28952
Number of extensions: 423212
Number of successful extensions: 1337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 5
length of query: 448
length of database: 12,070,560
effective HSP length: 83
effective length of query: 365
effective length of database: 9,667,544
effective search space: 3528653560
effective search space used: 3528653560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)